GLOBAL BIODIVERSITY INFORMATION FACILITY WWW.GBIF.ORG Agenda Building the Biodiversity Informatics Commons Meeting with El...
Agenda <ul><li>Overview of Elsevier’s Digital Publishing </li></ul><ul><ul><li>Embedded technology for value addition to s...
GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG...
GBIF: an intergovernmental initiative to share biodiversity information Currently 5 4  countries; 4 4  International Organ...
Growth in GBIF Participation NB: Drop in Associate Participants in 2007 is attributable to delays in signing the new MOU 2...
GBIF’s Mandate ” To  facilitate free and open access to biodiversity data  worldwide, via the Internet, to underpin scient...
Data shared online via GBIF  (> 200  m biodiversity records mapped to a 1 X 1 degree grid) Data Publishers: 312 Data Resou...
GBIF facilitates access/exchange of data <ul><li>GBIF-mediated data on the ‘India’ </li></ul>
GBIF Data portal and data access/sharing/ repatriation
GBIF, Global Information Infrastructure for Biodiversity <ul><li>Global Infrastructure </li></ul><ul><li>Tools, Standards,...
Global Biodiversity Research Infrastructure
At the core, a Discovery System Consumers Data Publishers Searching Retrieving Discovering Discovery System Registering Se...
That links to resources… Who? Institutions, Collections … What? Where? When? How Data, Services, GUID/LSID… Location, Acce...
Global Biodiversity Resources Discovery System (GBRDS) <ul><li>Institutions/Collections </li></ul><ul><li>LSIDs/DOI/GUIDs ...
Key Components: the IPT IPT The Integrated Publishing Toolkit is a state-of-the-art tool to simplify the  mobilization of ...
Simple process! The Integrated Publishing Toolkit (IPT) is designed to simplify the mapping, indexing and harvesting of Na...
In summary…GBIF’s Informatics Improved access to Names, Metadata  and Primary Biodiversity  Data Distributed GBIF  informa...
Primary biodiversity data and information  effectively available Data and information that  have been produced  but  are n...
<ul><li>Broadening Data Types </li></ul><ul><li>Data Resources Discovery </li></ul><ul><li>Innovative Approaches to Data M...
The Science-Policy Interface Management, conservation and sustainable use of biodiversity Policy development and decision ...
GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG...
Primary Data and Scholarly Publications <ul><li>Isolated islands: Lack of interconnections </li></ul>Chavan, August 2009 <...
<ul><li>Recognition </li></ul><ul><li>Opportunities </li></ul><ul><li>Investment </li></ul>Why should I publish data? What...
Data Publishing Framework <ul><li>Cultural change towards ‘ free and open access ’ to biodiversity data </li></ul><ul><li>...
Chavan and Ingwersen (2009) ,  BMC Bioinformatics, 10 (Suppl. 14): S2
DPF: Core Technical Components Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
Occurrence Data KML file Data Publication together with scholarly publication: ZooKeys experience Penev, et.al. (2009). Zo...
Persistent Identifiers Journal  System Submission Acceptance Revision Peer Review Publication DoI Distributed Metadata  Ca...
Data Citation Mechanism & Service <ul><li>Deep data citation mechanism </li></ul><ul><ul><li>Recognise ALL with their role...
Data Usage Index (DUI): Why? <ul><li>To demonstrate to data publishers that their biodiversity efforts do have impact </li...
DPF: Challenges Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2  Policy & Political Uptake Cultural &...
Impact of Data Publishing Framework Funding Agencies Project Data Creation,  Collection Analysis, Interpretation Scholarly...
GBIF & Elsevier: Collaboration <ul><li>Data paper </li></ul><ul><ul><li>Metadata documents to describe data resources </li...
Email:  [email_address] Data Publishing together with  Scholarly Publishing!
© Vishwas Chavan, 2009 Metadata  Catalogues HIT HIT Data Publishers IPT Other Publishing  Tools Processed  Indexes Integra...
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Elsevier1 vc

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Presentation given to Elsevier BV, The Netherlands in May 2010

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  • DIGIT has moved from its NHC focus (specimen, observation, multimedia, impact assessments, domain specific task groups). Data Resources Discovery – GBRDS is planned as registry of biodiversity resources, GBRDS Stakeholders workshop, GBRDS as tool for investment in BI. GSAP-NHC has recommended that metadata creation is way forward to expedite NHC digitisation. Innovative approaches are being adopted by the network Participants as fall out of targets set by 2009-2010 WP. Data Mobilisation Strategy Discussions – assess realities, challenges, and potentials of the Participants Data Publishing Framework Task Group: Data Publishing on par with Scholarly publishing: (a) recommendation on data discovery and publishing, (b) data publishing together with scholarly publishing, (c) Data Paper, (d) Data Usage Index, (e) Data Citation Mechanism
  • Elsevier1 vc

    1. 1. GLOBAL BIODIVERSITY INFORMATION FACILITY WWW.GBIF.ORG Agenda Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
    2. 2. Agenda <ul><li>Overview of Elsevier’s Digital Publishing </li></ul><ul><ul><li>Embedded technology for value addition to scholarly publishing </li></ul></ul><ul><li>GBIF Overview </li></ul><ul><ul><li>What is GBIF & its achievements </li></ul></ul><ul><ul><li>Data Publishing Framework </li></ul></ul><ul><ul><li>Global Names Architecture </li></ul></ul><ul><li>What’s Next </li></ul><ul><ul><li>Actions, Responsibilities & timelines </li></ul></ul>
    3. 3. GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG GBIF & its achievements Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
    4. 4. GBIF: an intergovernmental initiative to share biodiversity information Currently 5 4 countries; 4 4 International Organisations…
    5. 5. Growth in GBIF Participation NB: Drop in Associate Participants in 2007 is attributable to delays in signing the new MOU 2007-2011 Last updated: 2010-02-12 39 51 63 72 78 81 79 88 97 98
    6. 6. GBIF’s Mandate ” To facilitate free and open access to biodiversity data worldwide, via the Internet, to underpin scientific research, conservation and sustainable development.” GBIF is govt-initiated, and govt. funded, in response to government agency needs in biodiversity information access and management; GBIF is in service to science, as a global ‘public good’
    7. 7. Data shared online via GBIF (> 200 m biodiversity records mapped to a 1 X 1 degree grid) Data Publishers: 312 Data Resources: 9900
    8. 8. GBIF facilitates access/exchange of data <ul><li>GBIF-mediated data on the ‘India’ </li></ul>
    9. 9. GBIF Data portal and data access/sharing/ repatriation
    10. 10. GBIF, Global Information Infrastructure for Biodiversity <ul><li>Global Infrastructure </li></ul><ul><li>Tools, Standards, and Processes </li></ul><ul><li>Strategies and Policy Framework </li></ul><ul><li>Outreach and Capacity Building </li></ul>
    11. 11. Global Biodiversity Research Infrastructure
    12. 12. At the core, a Discovery System Consumers Data Publishers Searching Retrieving Discovering Discovery System Registering Service Publishers Others…
    13. 13. That links to resources… Who? Institutions, Collections … What? Where? When? How Data, Services, GUID/LSID… Location, Access points… Temporal Scope… Formats, protocols, qualities A distributed service ………… .. which resolves to information resources … ./
    14. 14. Global Biodiversity Resources Discovery System (GBRDS) <ul><li>Institutions/Collections </li></ul><ul><li>LSIDs/DOI/GUIDs </li></ul><ul><li>Standards </li></ul><ul><li>Protocols </li></ul><ul><li>Resources </li></ul><ul><li>Services/Applications </li></ul><ul><li>etc… </li></ul>
    15. 15. Key Components: the IPT IPT The Integrated Publishing Toolkit is a state-of-the-art tool to simplify the mobilization of biodiversity information resources such as Names, Metadata and primary biodiversity data Data Publisher Registration (GBRDS) + Publishing of Names, Metadata, Primary biodiversity data etc…
    16. 16. Simple process! The Integrated Publishing Toolkit (IPT) is designed to simplify the mapping, indexing and harvesting of Names, Metadata and Primary Biodiversity Data!
    17. 17. In summary…GBIF’s Informatics Improved access to Names, Metadata and Primary Biodiversity Data Distributed GBIF informatics architecture Faster and easier publishing of data
    18. 18. Primary biodiversity data and information effectively available Data and information that have been produced but are not easy to find, access, and use (i.e not effectively available!) - a gigantic task of mobilising billions of data is still needed, as well as integrating new data. Biological collections Scientific publications Observations Reports Gray literature Data Bases Geography
    19. 19. <ul><li>Broadening Data Types </li></ul><ul><li>Data Resources Discovery </li></ul><ul><li>Innovative Approaches to Data Mobilisation </li></ul><ul><li>Data Mobilisation Strategy Discussions </li></ul><ul><li>Data Publishing Framework </li></ul>Improving mobilisation and Cultural Changes
    20. 20. The Science-Policy Interface Management, conservation and sustainable use of biodiversity Policy development and decision making (at local, national, regional, and global levels) Scientific monitoring of status and trends of biodiversity GBIF-published data and analyses
    21. 21. GLOBAL BIODIVERSITY INFORMATION FACILITY Dr Vishwas Chavan Senior Programme Officer for DIGIT [email_address] WWW.GBIF.ORG Data Publishing Framework Planning & Implementation at the National Level Building the Biodiversity Informatics Commons Meeting with Elsevier 11 May 2010, Amsterdam
    22. 22. Primary Data and Scholarly Publications <ul><li>Isolated islands: Lack of interconnections </li></ul>Chavan, August 2009 <ul><li>Limits usage and impact of scholarly publications </li></ul><ul><li>Barriers in proving replication and reliability of results </li></ul>
    23. 23. <ul><li>Recognition </li></ul><ul><li>Opportunities </li></ul><ul><li>Investment </li></ul>Why should I publish data? What is there for me?
    24. 24. Data Publishing Framework <ul><li>Cultural change towards ‘ free and open access ’ to biodiversity data </li></ul><ul><li>Addresses social, technical, and policy concerns </li></ul><ul><li>Answer ‘ What is there for me?’ for ALL </li></ul>
    25. 25. Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
    26. 26. DPF: Core Technical Components Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
    27. 27. Occurrence Data KML file Data Publication together with scholarly publication: ZooKeys experience Penev, et.al. (2009). ZooKeys, 11: 1-8.
    28. 28. Persistent Identifiers Journal System Submission Acceptance Revision Peer Review Publication DoI Distributed Metadata Catalogues Metadata Authors auto conversion to manuscript GBIF Metadata Repository Current Biology PhytoKeys Indian J. Mar. Sci. Registry GBRDS
    29. 29. Data Citation Mechanism & Service <ul><li>Deep data citation mechanism </li></ul><ul><ul><li>Recognise ALL with their roles </li></ul></ul><ul><ul><li>Multilayer citation – producer, publisher, aggregator </li></ul></ul><ul><ul><li>Citations within citations </li></ul></ul><ul><li>Data Citation Service </li></ul><ul><ul><li>Resolve citation any time </li></ul></ul><ul><ul><li>Discover the underlined data </li></ul></ul><ul><li>Under development </li></ul>
    30. 30. Data Usage Index (DUI): Why? <ul><li>To demonstrate to data publishers that their biodiversity efforts do have impact </li></ul>Chavan, June 2009 <ul><li>To encourage … </li></ul><ul><ul><li>Increase of high quality data discovery and mobilisation </li></ul></ul><ul><ul><li>Further usage of biodiversity data and information in scientific work </li></ul></ul><ul><ul><li>Formal citation behavior in research papers of dataset </li></ul></ul><ul><ul><li>Standardisation of dataset information </li></ul></ul>
    31. 31. DPF: Challenges Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2 Policy & Political Uptake Cultural & Social Acceptance <ul><li>Individual Researcher </li></ul><ul><li>Scientific and Academic Institutions </li></ul><ul><li>Funding and Donor Agencies </li></ul><ul><li>Traditional Publishing Industry </li></ul>
    32. 32. Impact of Data Publishing Framework Funding Agencies Project Data Creation, Collection Analysis, Interpretation Scholarly Publishing Data Management, & Archival Data Publishing Increased Data Usage Knowledge Dissemination support results in Inspires another results in requires provide feedback on gaps and strategies for leads to Metadata facilitate facilitate results in Improves data quality and fitness facilitate encourages Existing cycle Complementary Expected cycle Impact Factor Data Usage Index Data Discovery Incentivisation through Data Paper leads to leads to leads to results in Source: BMC Bioinformatics 2009, 10 (Suppl 14) : S2, doi:10.1186/1471-2105-10-S14-S2
    33. 33. GBIF & Elsevier: Collaboration <ul><li>Data paper </li></ul><ul><ul><li>Metadata documents to describe data resources </li></ul></ul><ul><li>Simultaneous Publishing of scholarly work and Data </li></ul><ul><ul><li>GBIF as an infrastructure to archive and publish data resources associated with scholarly publication </li></ul></ul><ul><li>Data Citation Mechanism & Service </li></ul><ul><ul><li>Deep data citation mechanism </li></ul></ul><ul><ul><li>Data citation service </li></ul></ul><ul><li>Data Usage Index </li></ul>
    34. 34. Email: [email_address] Data Publishing together with Scholarly Publishing!
    35. 35. © Vishwas Chavan, 2009 Metadata Catalogues HIT HIT Data Publishers IPT Other Publishing Tools Processed Indexes Integration Services Applications Portals Open Journal System Scholarly Publishing Other Review Systems Submission Acceptance Revision Peer Review Publication International Journal of Biodiversity Data auto conversion to manuscript Registry GBRDS DoI
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