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INOTAXA markup and its relations to ViBRANT
INOTAXA markup and its relations to ViBRANT
INOTAXA markup and its relations to ViBRANT
INOTAXA markup and its relations to ViBRANT
INOTAXA markup and its relations to ViBRANT
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INOTAXA markup and its relations to ViBRANT

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  • “ To set up the means, tools and infrastructure to produce a more rational and a more effective framework for European Biodiversity research”
  • Transcript

    • 1. INOTAXA markup and its relation to ViBRANT Chris Lyal Natural History Museum [email_address] Workpackage 7 Biodiversity literature access and data mining ViBRANT Virtual Biodiversity
    • 2. taXMLit and INOTAXA <ul><li>Joint project with Anna Weitzman, Smithsonian Institution </li></ul><ul><li>Prior work with OU team in ABLE project </li></ul><ul><li>taXMLit </li></ul><ul><li>XML schema for taxonomic literature - atomised markup </li></ul><ul><li>covers complete papers, not just treatments </li></ul><ul><li>markup route via TEI-Lite+ / taXMLit-simple </li></ul><ul><li>INOTAXA - http://www.inotaxa.org </li></ul><ul><li>developed using user needs feedback </li></ul><ul><li>simple and Boolean searches and browse facility </li></ul><ul><li>current contents: ca. 900pp legacy and recent literature </li></ul><ul><li>developing a further ca 50,000 treatments for simple search </li></ul><ul><li>being developed from pilot to production </li></ul> of 5
    • 3. What we will do in ViBRANT <ul><li>Provide assistance to OU (and other WP 7 members if required) on subject-specialist taxonomic issues for markup. </li></ul><ul><li>Provision of taXMLit & taXMLit-simple schemas + mark-ups + documentation. </li></ul><ul><li>- next week </li></ul><ul><li>3. Mapping between other schemas / DTDs (taxonX, TaxPub) and taXMLit-simple (format-based, without deep atomisation) </li></ul><ul><li>Month 3 </li></ul><ul><li>4 Search and information retrieval from marked-up documents, using INOTAXA </li></ul><ul><li>Will be made available with documentation by month 12 for development </li></ul><ul><li>5 Upload tool to put content into back-end database </li></ul><ul><li>Will be made available with documentation by month 12 for development </li></ul><ul><li>6 Review of pilot mark-up processes </li></ul><ul><li>- Month 20 </li></ul> of 5
    • 4. How we are doing it <ul><li>Close liaison, particularly with OU team, on search system. </li></ul><ul><li>Liaison with PenSoft, KIT team, on taXMLit-simple / taXMLit schemas </li></ul><ul><li>INOTAXA database and search/retrieval system currently being re-built using PHP and a MySQL database. Funded outside ViBRANT. </li></ul><ul><li>Upload tool for texts in taXMLit and taXMLit-simple to be built. Funded outside ViBRANT. </li></ul><ul><li>Integration of INOTAXA and upload tool with Scratchpad to be discussed once full documentation available. </li></ul><ul><li>Integration of INOTAXA with other WP7 outputs (with other WP7 participants). </li></ul> of 5
    • 5. Who are our users & how will they engage? <ul><li>Taxonomists via the Scratchpads </li></ul><ul><li>Taxonomists directly to INOTAXA.org </li></ul><ul><ul><li>currently sited on NHM server </li></ul></ul><ul><ul><li>will be sited also on Smithsonian server </li></ul></ul><ul><ul><li>metrics not currently available </li></ul></ul><ul><ul><li>INOTAXA built with user involvement </li></ul></ul><ul><li>Wider users via EoL (currently 866 pages; pages viewed in December = 78; 152 page views) </li></ul> of 5

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