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Ugene wd bosc13

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Transcript

  • 1. UGENE Workflow Designer. Flexible control and extension of pipelines with scripts
  • 2. Yeah! I’ve come up with a new tool Ooh… It’s already there
  • 3. Hey! I need all the tools.
  • 4. • Multiple Alignment: MUSCLE, Kalign, Clustal, Mafft, T-Coffee • Ultra fast repeat finder • HMMER, ORF Finder, Restriction sites • Remote databases queries (BLAST, CDD, DAS, etc.) • Phylogenetic trees • TFBSs • >20 data formats
  • 5. On local machine Share files with schemes Imports data to internal DB Or passes file URLs Extension with external instruments
  • 6. Implemented in C Let users setup and run workflows Extended for Python