UGENE Workflow
Designer.
Flexible control
and extension of
pipelines with
scripts
Yeah! I’ve
come up
with a new
tool
Ooh… It’s
already
there
Hey!
I need all
the tools.
• Multiple Alignment:
MUSCLE, Kalign, Clustal,
Mafft, T-Coffee
• Ultra fast repeat finder
• HMMER, ORF Finder,
Restriction...
On local machine
Share files with schemes
Imports data to internal DB
Or passes file URLs
Extension with
external instrume...
Implemented in C
Let users setup and
run workflows
Extended for Python
Ugene wd   bosc13
Ugene wd   bosc13
Ugene wd   bosc13
Ugene wd   bosc13
Ugene wd   bosc13
Ugene wd   bosc13
Ugene wd   bosc13
Ugene wd   bosc13
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Ugene wd bosc13

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Ugene wd bosc13

  1. 1. UGENE Workflow Designer. Flexible control and extension of pipelines with scripts
  2. 2. Yeah! I’ve come up with a new tool Ooh… It’s already there
  3. 3. Hey! I need all the tools.
  4. 4. • Multiple Alignment: MUSCLE, Kalign, Clustal, Mafft, T-Coffee • Ultra fast repeat finder • HMMER, ORF Finder, Restriction sites • Remote databases queries (BLAST, CDD, DAS, etc.) • Phylogenetic trees • TFBSs • >20 data formats
  5. 5. On local machine Share files with schemes Imports data to internal DB Or passes file URLs Extension with external instruments
  6. 6. Implemented in C Let users setup and run workflows Extended for Python

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