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Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
Bioinformationist@UofM
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Bioinformationist@UofM

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  • Transcript

    • 1. University of Michigan Health Sciences Libraries Bioinformatics Support and Education Jean Song University of Michigan [email_address] March 2008
    • 2. Overview <ul><li>The Bioinformationist </li></ul><ul><ul><li>National Center for Integrative Biomedical Informatics (NCIBI) </li></ul></ul><ul><ul><li>Core 5 </li></ul></ul><ul><ul><li>Licensing </li></ul></ul><ul><ul><li>Research </li></ul></ul><ul><li>Bioinformatics Interest Group (BIG) </li></ul><ul><ul><li>Workshops </li></ul></ul><ul><ul><li>Libguide </li></ul></ul><ul><li>Clinical Translational Science Award (CTSA) </li></ul><ul><ul><li>CTSA Librarian </li></ul></ul><ul><ul><li>Projects </li></ul></ul><ul><li>Future Goals </li></ul>
    • 3. The Bioinformationist <ul><li>Early 2007, pilot project collaboration </li></ul><ul><li>Health Sciences Libraries and NCIBI </li></ul><ul><li>Purpose: test the viability of a bioinformationist to increase research support in bioinformatics </li></ul><ul><li>Recruitment </li></ul><ul><li>Initial work </li></ul><ul><li>Position funding </li></ul>
    • 4. Health Sciences Libraries <ul><li>Mission: a valued partner, fully integrated into the work of the university and providing leadership in knowledge management for education, research, patient care, and community outreach </li></ul><ul><li>Serves School of Medicine, Nursing, Pharmacy, Dentistry, Public Health, University of Michigan Health System </li></ul><ul><li>Working and historical collection </li></ul>
    • 5. National Center for Integrative Biomedical Informatics <ul><li>A National Center for Biomedical Computing (NCBCs) in the NIH Roadmap </li></ul><ul><li>University of Michigan’s Center for Computational Medicine and Bioinformatics (CCMB) </li></ul><ul><li>Problem-centric development based on Driving Biological Projects </li></ul>
    • 6. NCIBI Structure <ul><li>Core 1 – Computer and Information Science </li></ul><ul><li>Core 2 – Bioinformatics & Knowledge Acquisition </li></ul><ul><li>Core 3 – Driving Biological Problems </li></ul><ul><li>Core 4 – Computational Infrastructure </li></ul><ul><li>Core 5 – Education </li></ul><ul><li>Core 6 – Outreach and Dissemination </li></ul><ul><li>Core 7 – Administration </li></ul>
    • 7. Core 5 Support <ul><li>Education </li></ul><ul><ul><li>Tools documentation </li></ul></ul><ul><ul><li>Tutorials </li></ul></ul><ul><ul><li>Tools analysis </li></ul></ul><ul><li>Usability Analysis </li></ul><ul><ul><li>User testing </li></ul></ul><ul><ul><li>Heuristic evaluations </li></ul></ul><ul><li>Design Analysis </li></ul><ul><ul><li>Web design </li></ul></ul><ul><ul><li>Tools design </li></ul></ul>
    • 8. Core 5 Contributions <ul><li>Education </li></ul><ul><ul><li>Tools documentation </li></ul></ul><ul><ul><li>Tutorials </li></ul></ul><ul><ul><li>Tools analysis </li></ul></ul><ul><li>Usability Analysis </li></ul><ul><ul><li>User testing </li></ul></ul><ul><ul><li>Heuristic evaluations </li></ul></ul><ul><li>Design Analysis </li></ul><ul><ul><li>Web design </li></ul></ul><ul><ul><li>Tools design </li></ul></ul>
    • 9. Core 5 Contributions <ul><li>Education </li></ul><ul><ul><li>Tools documentation </li></ul></ul><ul><ul><li>Tutorials </li></ul></ul><ul><ul><li>Tools analysis </li></ul></ul><ul><li>Usability Analysis </li></ul><ul><ul><li>User testing </li></ul></ul><ul><ul><li>Heuristic evaluations </li></ul></ul><ul><li>Design Analysis </li></ul><ul><ul><li>Web design </li></ul></ul><ul><ul><li>Tools design </li></ul></ul>
    • 10. Support Initiatives <ul><li>Licensing </li></ul><ul><ul><li>Incoming data sources </li></ul></ul><ul><ul><li>General Terms of Use </li></ul></ul><ul><ul><li>Outgoing data </li></ul></ul><ul><li>Scholarly Publishing </li></ul><ul><ul><li>Open Access Week </li></ul></ul><ul><ul><li>Natural Language Processing </li></ul></ul><ul><ul><li>NIH Public Access Policy compliance pilot </li></ul></ul><ul><li>The Bioinformationista </li></ul>
    • 11. <ul><li>Licensing </li></ul><ul><ul><li>Incoming data sources </li></ul></ul><ul><ul><li>General Terms of Use </li></ul></ul><ul><ul><li>Outgoing data </li></ul></ul><ul><li>Scholarly Publishing </li></ul><ul><ul><li>Open Access Week </li></ul></ul><ul><ul><li>Natural Language Processing </li></ul></ul><ul><ul><li>NIH Public Access Policy compliance pilot </li></ul></ul><ul><li>The Bioinformationista </li></ul>Support Initiatives
    • 12. Support Initiatives <ul><li>Licensing </li></ul><ul><ul><li>Incoming data sources </li></ul></ul><ul><ul><li>General Terms of Use </li></ul></ul><ul><ul><li>Outgoing data </li></ul></ul><ul><li>Scholarly Publishing </li></ul><ul><ul><li>Open Access Week </li></ul></ul><ul><ul><li>Natural Language Processing </li></ul></ul><ul><ul><li>NIH Public Access Policy compliance pilot </li></ul></ul><ul><li>The Bioinformationista </li></ul>
    • 13. Bioinformatics Interest Group <ul><li>Divisional collaboration within the University Library system </li></ul><ul><ul><li>Science, Health Sciences Libraries, Engineering </li></ul></ul><ul><li>Challenges of supporting bioinformatics research </li></ul><ul><ul><li>Multi-disciplinary nature </li></ul></ul><ul><ul><li>Historical compartmentalization of library services </li></ul></ul><ul><ul><li>Geographic separation of libraries and campuses </li></ul></ul><ul><li>Cannot be achieved by a single person </li></ul><ul><li>Mission: provide innovative resources to support bioinformatics research on campus </li></ul><ul><li>Meets on alternating campuses with informational session on current bioinformatics topic </li></ul>
    • 14. BIG Support Initiatives <ul><li>NCBI User Services training alternative </li></ul><ul><ul><li>Collaborated with CCMB </li></ul></ul><ul><ul><li>Bioinformatics workshops: Field Guide, Powerscripting </li></ul></ul><ul><ul><li>Future: PubChem, Patents </li></ul></ul><ul><li>Development of bioinformatics library guide </li></ul>
    • 15. Clinical and Translational Science Award Liaison <ul><li>CTSA Goals </li></ul><ul><ul><li>Develop new methods to clinical/translational research </li></ul></ul><ul><ul><li>Improve training and mentoring </li></ul></ul><ul><ul><li>Design clinical research informatics tools </li></ul></ul><ul><ul><li>Assemble interdisciplinary teams </li></ul></ul><ul><ul><li>Forge new partnerships with private and public health care organizations </li></ul></ul><ul><li>CTSA Liaison Librarian </li></ul><ul><li>Support Initiatives </li></ul><ul><ul><li>Infobuttons: drug resources, clinical trials </li></ul></ul><ul><ul><li>Portal </li></ul></ul><ul><ul><li>Curriculum committee </li></ul></ul>
    • 16. Partnerships <ul><li>National Center for Integrative Biomedical Informatics (CCMB) </li></ul><ul><li>Michigan Institute for Clinical and Health Research (CTSA) </li></ul><ul><li>University Library </li></ul><ul><li>School of Information </li></ul><ul><ul><li>Community Informatics, Informatics, HCI </li></ul></ul><ul><ul><li>Practical Engagement Program </li></ul></ul><ul><ul><li>Projects </li></ul></ul><ul><ul><ul><li>Bioinformatics library guide </li></ul></ul></ul><ul><ul><ul><li>Gene name curation </li></ul></ul></ul><ul><ul><li>Extended collaboration </li></ul></ul><ul><ul><ul><li>National Cancer Institute </li></ul></ul></ul><ul><ul><ul><li>Workshops using NCIBI tools, tutorials, user testing </li></ul></ul></ul><ul><li>Taubman Medical Research Institute </li></ul><ul><li>Office of Technology Transfer </li></ul><ul><li>General Counsel </li></ul>
    • 17. Future Goals <ul><li>Additional partnerships </li></ul><ul><ul><li>Internal: Schools of Dentistry, Nursing, Pharmacy, Public Health </li></ul></ul><ul><ul><li>External: Public health practice professionals, information specialists </li></ul></ul><ul><li>Collaborative research </li></ul><ul><ul><li>Funding </li></ul></ul><ul><ul><li>Grant applications </li></ul></ul><ul><ul><li>Integral team member </li></ul></ul><ul><ul><li>Citation analysis, research productivity </li></ul></ul><ul><li>Education </li></ul><ul><ul><li>Curriculum integration </li></ul></ul><ul><ul><li>Workshops </li></ul></ul>
    • 18. Acknowledgements <ul><li>Health Sciences Libraries </li></ul><ul><li>National Center for Integrative Biomedical Informatics NIH Grant #U54-DA021519 </li></ul>
    • 19. MICHR <ul><li>Collaboration of over 30 schools, departments and centers </li></ul><ul><li>12 cores </li></ul><ul><ul><li>Clinical translational science </li></ul></ul><ul><ul><li>Pilot and collaborative grants </li></ul></ul><ul><ul><li>Biomedical informatics </li></ul></ul><ul><ul><li>Biostatistics </li></ul></ul><ul><ul><li>Ethics </li></ul></ul><ul><ul><li>Regulatory knowledge and support </li></ul></ul><ul><ul><li>MCRU (Michigan clinical research unit) </li></ul></ul><ul><ul><li>Community engagement </li></ul></ul><ul><ul><li>Technical cores program </li></ul></ul><ul><ul><li>Health disparities research </li></ul></ul><ul><ul><li>Pediatrics (consultation on inclusion of pediatric populations) </li></ul></ul><ul><ul><li>Education career development and mentoring </li></ul></ul>

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