General updates about SBML and SBML Team activities

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Slides from presentation given at COMBINE 2011, in Heidelberg, Germany, on September 4, 2011.

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General updates about SBML and SBML Team activities

  1. 1. General updates about SBML and SBML Team activitiesMichael Hucka and the rest of the SBML Team Control and Dynamical Systems Division of Engineering and Applied Science California Institute of Technology Pasadena, CA, USA 2
  2. 2. 1. SBML.org UpdatesOutline 2. SBML Development 3. SBML Team Software 3
  3. 3. SBML.org updates 4
  4. 4. SBML Software Guide changes 5
  5. 5. New version of the SBML software survey 6
  6. 6. Forthcoming in the SBML Software GuideMore data about SBML software in the worldMore accurate data about SBML software in the worldStatistics about SBML software in the world • Examples: data on 81 software tools reported between May–July MIRIAM 16 SBO 14 Supports SBGN 13 SBML Level 3 BioPAX 6 36% Does not yet CellML 3 support Level 3 SED-ML 3 64% MFAML 1 PNML 1 SBOL 1 0 5 10 15 20 Percentage supporting Total # tools supporting other standards SBML Level 3 7
  7. 7. Updated SBML Level 3 package activity table http://sbml.org/Community/Wiki 8
  8. 8. SBML Development 9
  9. 9. SBML Development Process Progresshttp://sbml.org/Documents/SBML_Development_Process 10
  10. 10. Elaboration of process for Level 3 packages 11
  11. 11. Further elaboration of package voting criteria 12
  12. 12. Writing L3 package specsProper draft spec. for Hierarchical Model Composition almost readyNew LaTeX templates for SBML package specifications 13
  13. 13. SBML Editor vote coming up Chris Jim Lucian Sarah Frank Yours trulyOne new editor being replaced • Nominations & voting open to anyone on sbml-discuss mailing list 14
  14. 14. SBML Editor vote coming up Chris Jim Lucian Sarah ? Frank Yours trulyOne new editor being replaced • Nominations & voting open to anyone on sbml-discuss mailing list 14
  15. 15. SBML Team Software 15
  16. 16. libSBML 5.0.0: over 3400 downloads since April 800 700 188 600 195 158 500 64 201 93 122 400 147 52 103 126 300 103 119 Source 200 52 40 331 Mac OS X 268 298 Linux 100 215 155 Windows 0 April May June July AugustDownloads of all libSBML 5.0.0 distributions since April 16
  17. 17. Other software newsLibSBML, JSBML, SBMLToolbox, Online SBML Validator, others....... Listen to Sarah, Frank, Nico & Andreas 17

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