IAGC Collaboration Wiki Shuji Shigenobu (Wiki Working Group) Princeton University JST PRESTO, Japan National Institute for Basic Biology Pea aphid genome annotation meeting July 14-15, 2008 (Princeton, NJ)

IAGC Collaboration Wiki The the portal website for the manual annotation of the pea aphid genome

The the portal website for the manual annotation of the pea aphid genome

IAGC Collaboration Wiki The portal website for the manual annotation A vehicle for collaboration within annotation groups Coordinate companion paper submission Coordinate the main genome paper preparation 4 Purposes Collaboration

The portal website for the manual annotation

A vehicle for collaboration within annotation groups

Coordinate companion paper submission

Coordinate the main genome paper preparation

What’s Wiki? A category of web-based collaboration software Anyone can create and edit webpage Simple and easy editing Eamples: Wikipedia (Share knowledge) Open Source Software development (Share knowledge, code, file.)

A category of web-based collaboration software

Anyone can create and edit webpage

Simple and easy editing

Eamples:

IAGC Collaboration Wiki Any scientists Information flow Annotators, Paper authors AphidBase/GBrowse Wiki

Any scientists

Functions of IAGC Collaboration Wiki Information center IAGC provides useful and necessary information guidelines, training resources, announcements etc. Share knowledge any user can post articles and files On-line work space Webpage (ex. summary page of email discussion) Share files Simultaneous editing by multiple users Access control

Information center

IAGC provides useful and necessary information

guidelines, training resources, announcements etc.

Share knowledge

any user can post articles and files

On-line work space

Webpage (ex. summary page of email discussion)

Share files

Simultaneous editing by multiple users

Access control

IAGC Wiki Usage Training Q . Who should learn the usage? A. All of YOU! - All annotators & paper authors - Particularly group leaders should be familiar with it.

Q . Who should learn the usage?

A. All of YOU!

- All annotators & paper authors - Particularly group leaders should be familiar with it.

Case Study Mission: Summarize discussion on emails Edit the summary page with other members Upload gene list file, which is MS Excel Setting permission so that only group member can access the page.

Mission:

Summarize discussion on emails

Edit the summary page with other members

Upload gene list file, which is MS Excel

Setting permission so that only group member can access the page.

Further information Technical Issue: Go to the developer website Confluence http://www.atlassian.com/software/confluence/ Contents Issue: Contact IAGC Collaboration Wiki WG Shuji Shigenobu, Jing-Jiang Zhou, John Colbourne, Alex Wilson

Technical Issue:

Go to the developer website

Confluence

http://www.atlassian.com/software/confluence/

Contents Issue:

Contact IAGC Collaboration Wiki WG

Shuji Shigenobu, Jing-Jiang Zhou, John Colbourne, Alex Wilson

Final Message To utilize IAGC Collaboration Wiki is a key to successful community annotation Happy Collaboration & Happy Genome Hacking!

To utilize IAGC Collaboration Wiki is a key to successful community annotation