Steven Roberts, an associate professor at the University of Washington School of Aquatic and Fishery Sciences, practices open notebook science by making all data and materials from his lab freely available online. This includes slides, data, and his lab notebook, which has evolved over time and is now hosted at sr320.info. He advocates transparency with limited effort to promote open science and sharing, beginning experiments openly from the start.
4.18.24 Movement Legacies, Reflection, and Review.pptx
Genomics on the Half Shell: Making Science more Open
1. Genomics on the Half Shell:
Making Science more Open
Steven B. Roberts
Associate Professor
School of Aquatic and Fishery Sciences
University of Washington
robertslab.info
2. Open Science
•You are free to Share!
•Our lab practices open notebook
science
•Slides and more available @
oystergen.es/data
48. Open Notebook Science
Biology
Environment
... there is a URL to a laboratory
notebook that is freely available and
indexed on common search engines.
It does not necessarily have to look
like a paper notebook but it is
essential that all of the information
available to the researchers to make
their conclusions is equally available
to the rest of the world.
Molecular
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
—Jean-Claude Bradley
everything else...
57. Open Notebook Science
Set some variables
blast
convert file format
upload to SQLShare
(python client)
join in SQLShare download
read in pandas
matplotlib generates
graph of GOsllim
60. Open Notebook Science
a very new experiment
Biology
Environment
Molecular
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
everything else...
61. Open Notebook Science
a very new experiment
Biology
Environment
Molecular
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
sr320.info
everything else...
62. Open Notebook Science
a very new experiment
Biology
Environment
Molecular
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
sr320.info
everything else...
74. Open Science Philosophy
Transparency with limited effort
Biology
Environment
Molecular
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
everything else...
75. Open Science Philosophy
Transparency with limited effort
will try just about anything
Biology
Environment
Molecular
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
everything else...
77. Biology
Environment
Molecular
Yasset Perez-Riverol en Wednesday, February 19, 2014
Data Analysis
eScience
iPlant Galaxy
Notebooks
Rationale
Platforms
Open Science
Data
everything else...
computationalproteomic.blogspot.com