How to Use mirtronDB

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HOW TO USE
#HELP

WELCOME to mirtronDB
mirtronDB is a comprehensive database about mirtrons.
Its resources allows users query mirtrons data ...

To access mirtronDB Home Page use: http://mirtrondb.cp.utfpr.edu.br/

#HOME: Presents to users basic informations about the repository.

#ABOUT: Orientations about how to cite us and repository build process scheme.

#SEARCH: The users can query mirtron data in 2 different methods:
Simple or Specifically.

#SEARCH:
In the “Simple” search the users can query mirtron data in two different ways: (i) Simple
Search by ORGANISM and ...

#SEARCH: Users can query mirtrons by organism, organism group,
mirtron type and mirtron name.
If necessary,
3. Choose a “M...

#SEARCH: Users can query mirtrons by paper.
2. Click in “Search”
1. Choose one or more papers.
SIMPLE SEARCH BY PAPER

#SEARCH: Users can query mirtrons by organism and mirtronDB name or
miRBase ou Paper Id.
SPECIFIC SEARCH
1. Choose an “Org...

#SEARCH: QUERY RESULT
In the query result are presented some basic mirtron data, such as mirtron organism
origin, name, ty...

Click in “Download Table” to
download the data table result
in CSV format.
DOWNLOAD RESULT TABLE
#SEARCH: QUERY RESULT

2. Click in “Fetch” button and a
FASTA file will be downloaded
1. select the respective
mirtron box
DOWNLOAD SPECIFIC
MIRT...

The term typed in this
field will be searched in all
table fields
SEARCHING IN THE RESULT
TABLE
#SEARCH: QUERY RESULT

#SEARCH: QUERY RESULT
To acess more
information about one
specific mirtron

#SEARCH: QUERY RESULT
In the status column you must consider:
 Known: Mirtrons that have convincing classification eviden...

#SEARCH: MIRTRON DETAILS
In the “+” button are presented all the functional data collected about the specific
mirtron, inc...

MIRTRON DETAIL SCREEN
miRBase link
#SEARCH: QUERY RESULT
Link to details about
others related mirtrons

MIRTRON DETAIL SCREEN
Download mirtron details
in CSV format
#SEARCH: QUERY RESULT
Network interactions
shortcut.
Analysis...

#BROWSER: Users can view mirtron data sorted by organism.
Click in an organism
image and access
mirtron data.

#BROWSER: Users can view mirtron data sorted by organism.
Details about a
specific mirtron
Search in all data
presented

#NETWORK: Users can build mirtrons/target-specific
network choosing specific mirtron.
In “Network” the users can visualize...

#NETWORK: Users can build mirtrons/target-specific
network choosing specific mirtron.

#NETWORK: Users can build mirtrons/target-specific
network choosing specific mirtron.
1. Choose an “Organism Group”
2. Cho...

#NETWORK: Users can build mirtrons/target-specific
network choosing specific mirtron.
Tool to navigate in
the visualizatio...

#STATISTICS: Users can view the statistics information about the
mirtron data available.
Click in an organism
name and acc...

#DOWNLOAD: Users can download all the relevant data freely.
The data are available in FASTA, GFF and TSV format.
Download ...

#JBROWSE: Users can visualize mirtrons in his genome context.
Link to mirtronDB
details page.

#JBROWSE: Users can visualize mirtrons in his genome context.
You can visualize mirtron details if you right-click it and
...

#SUBMIT: Users can access the guidelines for contribute
with mirtronDB.

How to Use mirtronDB

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