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Birg hku

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  • PENGENALAN SISTEM MAKLUMAT GEOGRAFI (GIS) 25 – 28 Ogos 2008 Jabatan Geoinformatik, FKSG Universiti Teknologi Malaysia
  • PENGENALAN SISTEM MAKLUMAT GEOGRAFI (GIS) 25 – 28 Ogos 2008 Jabatan Geoinformatik, FKSG Universiti Teknologi Malaysia
  • Transcript

    • 1. Bioinformatics Research Group, Biological Sciences Department, Faculty of Bioscience and Bioengineering, Research Group Profile
    • 2. Contents
      • Introduction to BIRG Team
      • Research Highlights
      • BIRG Activities
    • 3. Bioinformatics Research Group, Biological Sciences Department, Faculty of Bioscience and Bioengineering, Based in Malaysia 30 min from Singapore
    • 4. Peoples and Places
    • 5. Areas of bioinformatics
      • Biodiversity informatics
        • Web based solutions
        • Data management
        • Content management systems
      • Application of conventional non-biological applications
        • Geographical information Systems (GIS)
        • Light Detection And Ranging (LIDAR)
      • Brain Diseases-Alzheimer and associated diseases
        • Databases
        • Biomarker dataminer
        • Protein-protein interactions
      • Molecular dynamics simulations
        • Mad Cow Disease
        • Metallothioneins
        • Intrinsically Unstructured Proteins
        • Disul[hide bridge prediction
        • Thermal adaptations of proteins
    • 6. HIGHLIGHTS
    • 7. Web enabled solutions
    • 8. Projects
    • 9. Digitising the indigenous ethnobotanical knowledge of Endau Rompin. Farizuwana Akma Zulkifle 1 , Hasniza Ramli 2 , Mohd. Shahir Shamsir 1 1 Bioinformatics Research Group, Biological Sciences Department, Faculty of Bioscience and Bioengineering, Universiti Teknologi Malaysia, 81310 Skudai Johor [email_address] 2 Johor Biotechnology and Biodiversity Corporation, Johor State Government What we found
    • 10. What we found
      • vowel ≠ vowel
      • 112 plants
      • 12 unknowns
    • 11.  
    • 12.  
    • 13. GIS Mapping
    • 14. LIDAR Scanning SPECIES IDENTIFICATION SPELEOLOGICAL SURVEY
    • 15. Brain Diseases Database
    • 16. Mapping Protein-protein Interaction of Human Brain Diseases
    • 17. Molecular Dynamics Simulation
      • Use of simple potential-energy function to model molecular model molecular systems
        • Specific aspects of biomolecular structure, kinetics, and thermodynamics that can be investigated via MD:
          • Mad cow disease – Protein Structure, Function and Bioinformatics
          • Proline propensities – Journal of Molecular Biology
    • 18.  
    • 19.  
    • 20.  
    • 21. Web Tool: Strainer http://birg4.fbb.utm.my:8080/strainer
    • 22. Web Tool: Protein SMS http://birg3.fbb.utm.my/proteinsms
    • 23. Cluster Computing: birgHPC http://birg1.fbb.utm.my/birghpc
    • 24.  
    • 25. Grid Computing http://gridmacs.fbb.utm.my:8080/gridsphere http://gridpad.fbb.utm.my:8080/gridsphere
    • 26. Contact Us
      • Dr. Mohd. Shahir Shamsir Omar
      • Bioinformatics Research Group Lab Bioinformatics C08,  Faculty of Biosciences and Bioengineering Universiti Teknologi Malaysia 81310 Skudai, Johor MALAYSIA
      • E-mail:
      • [email_address]
      • [email_address]
    • 27. Questions

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