• Like
  • Save

Loading…

Flash Player 9 (or above) is needed to view presentations.
We have detected that you do not have it on your computer. To install it, go here.

Like this presentation? Why not share!

pipeline_structure_overview

on

  • 286 views

 

Statistics

Views

Total Views
286
Views on SlideShare
285
Embed Views
1

Actions

Likes
0
Downloads
0
Comments
0

1 Embed 1

http://www.linkedin.com 1

Accessibility

Categories

Upload Details

Uploaded via as OpenOffice

Usage Rights

© All Rights Reserved

Report content

Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
  • Full Name Full Name Comment goes here.
    Are you sure you want to
    Your message goes here
    Processing…
Post Comment
Edit your comment

    pipeline_structure_overview pipeline_structure_overview Presentation Transcript

    • NPG Pipeline Overview
    • analyse_RTA
    • PB_cal
    • post_qseq
    • post_qseq
    • post_qseq
    • post_qc_review
    • Additional Notes
      • Spider runs at the start and finish at the end of all the pipelines.
      • Spider caches web pages which are used throughout the pipeline and sets an environment variable, so that all launched jobs can access them.
      • Finish is very important, as it ties off the log files, and writes a json string of the processes launched, which is needed for the schema generation.
    • Additional Notes
      • Status changes have been left out, along with some file checking and creation of tag specific lane files which occur at the start of the primary analysis pipelines. These happen, but are not responsible directly for the files and qc that you see.
      • The production version of the primary pipeline launches a version of the secondary pipeline which creates a Latest_Summary link to it's archival files and QC.