Bioinformatics Resources<br />An Incomplete List<br />April 11, 2011, SS/SC Retreat<br />Sean Davis, M.D., Ph.D.<br />Gene...
Normal Karyotype<br />TumorKaryotype<br />
The Central Dogma<br />
Patient and Population Characteristics<br />Gene Expression<br />Gene Copy Number<br />Transcriptional Regulation<br />phe...
Overview<br />Hardware<br />Software<br />Online databases<br />Training and Education<br />Getting Answers<br />
Hardware<br />Computers<br />Current desktops quite capable<br />High-performance resources<br />Helix/Biowulf (CIT)<br />...
Software<br />Commercial<br />Open Source<br />
Software<br />
Software<br />Bioconductor<br />Bio-[Python, Java, Ruby, Perl]<br />BRB ArrayTools<br />GenePattern<br />And the list goes...
Software<br />
Online Databases<br />
Online Databases<br />
Training and Education<br />Google<br />CIT/Helix training<br />http://training.cit.nih.gov<br />NIH Library<br />http://n...
Getting Answers<br />Google<br />http://seqanswers.com/<br />http://biostar.stackexchange.com/<br />http://bioinformatics....
Contact and Acknowledgements<br />
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Sssc retreat.bioinfo resources.20110411

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Ten minute talk to the Staff Scientist and Staff Clinicians from NCI regarding bioinformatics resources.

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Sssc retreat.bioinfo resources.20110411

  1. 1. Bioinformatics Resources<br />An Incomplete List<br />April 11, 2011, SS/SC Retreat<br />Sean Davis, M.D., Ph.D.<br />Genetics Branch, Center for Cancer Research<br />National Cancer Institute<br />National Institutes of Health<br />
  2. 2. Normal Karyotype<br />TumorKaryotype<br />
  3. 3. The Central Dogma<br />
  4. 4. Patient and Population Characteristics<br />Gene Expression<br />Gene Copy Number<br />Transcriptional Regulation<br />phenotype<br />DNA Methylation<br />Chromatin Structure and Function<br />Sequence Variation<br />
  5. 5. Overview<br />Hardware<br />Software<br />Online databases<br />Training and Education<br />Getting Answers<br />
  6. 6. Hardware<br />Computers<br />Current desktops quite capable<br />High-performance resources<br />Helix/Biowulf (CIT)<br />Advanced Biomedical Computing Center (ABCC)<br />Amazon EC2<br />Storage<br />Local storage<br />Helix/Biowulf<br />NCI group drives<br />
  7. 7. Software<br />Commercial<br />Open Source<br />
  8. 8. Software<br />
  9. 9. Software<br />Bioconductor<br />Bio-[Python, Java, Ruby, Perl]<br />BRB ArrayTools<br />GenePattern<br />And the list goes on….<br />
  10. 10. Software<br />
  11. 11. Online Databases<br />
  12. 12. Online Databases<br />
  13. 13. Training and Education<br />Google<br />CIT/Helix training<br />http://training.cit.nih.gov<br />NIH Library<br />http://nihlibrary.nih.gov/ResearchTools/Pages/Bioinformatics.aspx<br />Cold Spring Harbor, AACR, OpenHelix, BioConductor, ….<br />
  14. 14. Getting Answers<br />Google<br />http://seqanswers.com/<br />http://biostar.stackexchange.com/<br />http://bioinformatics.nci.nih.gov/<br />CCR Bioinformatics Core<br />http://ccrifx.cancer.gov/<br />
  15. 15. Contact and Acknowledgements<br />

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