LAB

Genotype Data Management

V1.01
ABOUT US

FHQ
Family History Questionnaire

1900
78

UNIQUE SITES

COUNTRIES

CLINICAL
Pedigree and Clinical Data

LAB
Gen...
A FEW OF OUR 1900 CLIENTS
UNITED STATES
ARUP Labs
Baylor College of Medicine
Bristol Meyers Squib
Cedars-Sinai Medical Cen...
A FEW OF OUR 1900 CLIENTS
UNITED KINGDOM - EUROPE

AUSTRALIA – NEW ZEALAND

Aarhus University Hospital, AAS
Belfast City H...
SINGLE LICENSE INSTALLATION

WINDOWS SINGLE-USER LICENSE
The software application and the
database is on the local PC. If ...
CLIENT SERVER INSTALLATION

WINDOWS MULTI-USER ACCESS
Database is on the server. Progeny
application is installed on each
...
WEB SERVER INSTALLATION

PLATFORM INDEPENDENT ACCESS
Progeny Web Application and
Database can be installed on the
same Ser...
WEB SERVER INSTALLATION WITH REMOTE ACCESS
REMOTE USER

CLINICAL WEB
BROWSER CAN VIEW
GENOTYPES

DMZ

PROGENY WEB APPLICAT...
CUSTOMIZABLE DATABASE

Create unlimited fields to
track individual, pedigree,
sample, and marker data.
DATA ENTRY SCREENS
Create custom screens and track data
on individuals, pedigrees or samples.
IMPORT DATA

Import existing pedigree,
individual, or sample data from
Excel or other databases.
PEDIGREE DRAWING

Draw complex pedigrees quickly with
thousands of individuals and multiple
consanguineous relationships.
FLEXIBLE SYMBOLS

Create unlimited icon symbol
formats and display any data
field on the pedigree.
MANAGE PEDIGREES

Create as many folders while
managing an unlimited
number of pedigrees.
MANAGE INDIVIDUALS

Add individuals anytime and
attach them to a new or
existing pedigree when ready.
MANAGE SAMPLES

Manage sample data and link
these samples to any individual.
SAMPLE DATASHEET

Create your own data entry
screens to track any sample data.
MANAGE MARKER SETS

Manage unlimited marker sets.
Create custom sets to handle
animals or plants.
IMPORT GENOTYPE DATA

Import genotype data from any
type of file you want. Error check
for mendelian errors, missing
marke...
VIEW GENOTYPE DATA

Display haplotypes directly on the
pedigree to visually identify
genetic inheritance.
EXPORT DATA FOR ANALYSIS

Export data to any type of analysis
software. Even create your own
custom export format.
SPREADSHEET REPORTING

Generate custom spreadsheets
to query and analyze your
marker data with phenotypic
data…and export ...
FAMILY HISTORY QUESTIONNAIRE

Our Web Data Capture Tool
(sold separately) drops family
history data and pedigree
(automati...
PROGENY INTEGRATION PLATFORM (PIP)

Clinical
Systems

Clinical
Research

Robotic
Integration

PIP

Clinical Data
Repositor...
PROGENY INTEGRATION PLATFORM (PIP)
Example – Marker Data to Progeny LAB

EXTERNAL
MARKER
DATA
PROGENY INTEGRATION
SERVICES...
PROGENY SUPPORT PLAN (PSP)
PSP IS AN ANNUAL SUPPORT PLAN THAT PROVIDES:
•

Unlimited 800 Phone and email support FREE

•

...
WHY PROGENY?
WE’RE COMMITTED TO…
•

Utilize 17 years of software expertise to service over 1900
unique sites in 78 countri...
CONTACT US

QUESTIONS?
Conrad Brammer
Account Executive

Progeny Software, LLC
800 Palm Trail, Suite 200
Delray Beach, FL ...
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Progeny Lab

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Whether you’re managing whole genome association, targeted genotyping, or linkage studies, Progeny Lab is the ideal lab management software for all of your genetic data. Progeny Lab includes all the features of Progeny Clinical - so you can manage all of your phenotypic and genotypic data in the same database for the most thorough analysis available. Support is included for both SNPs and STRs, providing you with the ability to natively import genotype data from such varied platforms as ABI, Affymetrix, Illumina, Sequenom, and others. Progeny Lab incorporates a variety of error checks and has a number of time saving features streamlining the process of gene discovery.

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Progeny Lab

  1. 1. LAB Genotype Data Management V1.01
  2. 2. ABOUT US FHQ Family History Questionnaire 1900 78 UNIQUE SITES COUNTRIES CLINICAL Pedigree and Clinical Data LAB Genotype Data Management LIMS Sample and Lab Management
  3. 3. A FEW OF OUR 1900 CLIENTS UNITED STATES ARUP Labs Baylor College of Medicine Bristol Meyers Squib Cedars-Sinai Medical Center Children's Hospital of Philadelphia City of Hope Cleveland Clinic Foundation Columbia University Dana Farber Cancer Institute Duke University Medical Center GENENTECH GlaxoSmithKline Harvard Medical School John Hopkins School of Medicine Mayo Clinic Memorial Sloan-Kettering Cancer Center MGH National Cancer Institute National Institutes of Health Stanford University UCLA School of Medicine University of California, Irvine University of Iowa University of Pennsylvania University of Pittsburgh University of Texas, MD Anderson Cancer Center University of Utah USC Vanderbilt University CANADA Alberta Children’s Hospital BC Cancer Agency McGill University Health Centre Memorial University Newfoundland Mount Sinai Hospital Ontario Cancer Treatment & Research Foundation RCMP Central Forensic Lab The Hospital for Sick Children Toronto General Hospital Toronto-Sunnybrook
  4. 4. A FEW OF OUR 1900 CLIENTS UNITED KINGDOM - EUROPE AUSTRALIA – NEW ZEALAND Aarhus University Hospital, AAS Belfast City Hospital Cambridge University CCK, Karolinska Institute Erasmus University-Rotterdam Helsinki University Central Hospital Hopital Neckler Enfants Malades Iceland Genomics/UVS Institute of Cancer Research Karolinska Hospital Leiden University Medical Center Malmö University Hospital St. James's Hospital The Royal Edinburgh Hospital University of Leuven University of Oslo University of Regensburg University of Tartu University of Vienna Uppsala University Wellcome Trust Centre for Human Genetics Auckland Hospital International Diabetes Institute Peter McCallum Cancer Institute Queensland Institute of Medical Research Royal Melbourne Hospital St. George Hospital St. Vincent's Hospital University of Otago Westmead Hospital MIDDLE EAST – FAR EAST Cancer Institute WIA Junshinkai Familial Cancer Institute King Faisal Specialist Hospital & Research Centre National Cancer Center Research Institute National Taiwan University Radiation Effects Research Foundation Samsung Cheil Hospital, Sungkunkwan University Taipei Medical University UAE University Weizmann Institute of Science
  5. 5. SINGLE LICENSE INSTALLATION WINDOWS SINGLE-USER LICENSE The software application and the database is on the local PC. If you only have 1 user of the software, this will work. PROGENY DATABASE PROGENY CLIENT
  6. 6. CLIENT SERVER INSTALLATION WINDOWS MULTI-USER ACCESS Database is on the server. Progeny application is installed on each Windows PC that accesses the database on the server. PROGENY DATABASE WINDOWS OR LINUX SERVER PROGENY CLIENT PROGENY CLIENT PROGENY CLIENT
  7. 7. WEB SERVER INSTALLATION PLATFORM INDEPENDENT ACCESS Progeny Web Application and Database can be installed on the same Server. PROGENY WEB APP & DATABASE WINDOWS OR LINUX SERVER Progeny LAB can only be installed on a Windows PC. There is no option to install LAB as a Web Client application. You can however use Progeny Clinical to access the database from a Web Client and view genotypes in the pedigree. CLINICAL WEB BROWSER CAN VIEW GENOTYPES CLINICAL WEB BROWSER CAN VIEW GENOTYPES WINDOWS PC ADMINISTRATOR PROGENY LAB Web browsers supported: Chrome, Firefox, Safari, IE8 or newer
  8. 8. WEB SERVER INSTALLATION WITH REMOTE ACCESS REMOTE USER CLINICAL WEB BROWSER CAN VIEW GENOTYPES DMZ PROGENY WEB APPLICATION WINDOWS OR LINUX SERVER CORPORATE LAN PROGENY DATABASE WINDOWS OR LINUX SERVER APACHE TOMCAT (OR SIMILAR CONTAINER) To provide remote access to the application, setup the Web application in the DMZ as shown above. The Web application, database and administrator license reside behind a firewall, so there is no compromising of any data. WINDOWS PC ADMINISTRATOR PROGENY LAB
  9. 9. CUSTOMIZABLE DATABASE Create unlimited fields to track individual, pedigree, sample, and marker data.
  10. 10. DATA ENTRY SCREENS Create custom screens and track data on individuals, pedigrees or samples.
  11. 11. IMPORT DATA Import existing pedigree, individual, or sample data from Excel or other databases.
  12. 12. PEDIGREE DRAWING Draw complex pedigrees quickly with thousands of individuals and multiple consanguineous relationships.
  13. 13. FLEXIBLE SYMBOLS Create unlimited icon symbol formats and display any data field on the pedigree.
  14. 14. MANAGE PEDIGREES Create as many folders while managing an unlimited number of pedigrees.
  15. 15. MANAGE INDIVIDUALS Add individuals anytime and attach them to a new or existing pedigree when ready.
  16. 16. MANAGE SAMPLES Manage sample data and link these samples to any individual.
  17. 17. SAMPLE DATASHEET Create your own data entry screens to track any sample data.
  18. 18. MANAGE MARKER SETS Manage unlimited marker sets. Create custom sets to handle animals or plants.
  19. 19. IMPORT GENOTYPE DATA Import genotype data from any type of file you want. Error check for mendelian errors, missing markers, etc…
  20. 20. VIEW GENOTYPE DATA Display haplotypes directly on the pedigree to visually identify genetic inheritance.
  21. 21. EXPORT DATA FOR ANALYSIS Export data to any type of analysis software. Even create your own custom export format.
  22. 22. SPREADSHEET REPORTING Generate custom spreadsheets to query and analyze your marker data with phenotypic data…and export selected data to other programs as desired.
  23. 23. FAMILY HISTORY QUESTIONNAIRE Our Web Data Capture Tool (sold separately) drops family history data and pedigree (automatically drawn) securely and seamlessly into Progeny Lab. …an efficient tool for clinical trials, risk studies, clinical and research projects.
  24. 24. PROGENY INTEGRATION PLATFORM (PIP) Clinical Systems Clinical Research Robotic Integration PIP Clinical Data Repository EMR/EHR SHARE DATA ACROSS SYSTEMS Sold separately, the PIP allows you to route data between Progeny and another existing data source. This module can also stand on its own, and can actually route data between two existing data sources that have nothing to do with Progeny.
  25. 25. PROGENY INTEGRATION PLATFORM (PIP) Example – Marker Data to Progeny LAB EXTERNAL MARKER DATA PROGENY INTEGRATION SERVICES PROGENY DATABASE Data from an existing marker set may exist in a file that is external to Progeny. You may want to have that data dynamically link to Progeny’s database to update the data as it changes in the external file. The PIP can automate this process.
  26. 26. PROGENY SUPPORT PLAN (PSP) PSP IS AN ANNUAL SUPPORT PLAN THAT PROVIDES: • Unlimited 800 Phone and email support FREE • WebEx sessions to diagnose any problems for FREE • Updates, New Releases, tech support for FREE • Custom training available on-site or via WebEx • On-line video tutorials available via our website
  27. 27. WHY PROGENY? WE’RE COMMITTED TO… • Utilize 17 years of software expertise to service over 1900 unique sites in 78 countries. • Listen to our customers and deliver the most effective and efficient customized solution – we don’t oversell! • Deliver personalized training and tools to get you up and running without delay – at no additional cost. • Provide exceptional toll-free support – answered live by knowledgeable technicians. • Believe that if you’re completely satisfied, we’ll both be successful.
  28. 28. CONTACT US QUESTIONS? Conrad Brammer Account Executive Progeny Software, LLC 800 Palm Trail, Suite 200 Delray Beach, FL 33483 1.800.PROGENY Ext 211 866.479.6801 Fax cbrammer@progenygenetics.com www.progenygenetics.com

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