Your SlideShare is downloading. ×
  • Like
Mars intro
Upcoming SlideShare
Loading in...5
×

Thanks for flagging this SlideShare!

Oops! An error has occurred.

×

Now you can save presentations on your phone or tablet

Available for both IPhone and Android

Text the download link to your phone

Standard text messaging rates apply

Mars intro

  • 166 views
Published

Introduction presentation to the MARS workshop. http://antarcticbiodiversity.blogspot.com/2012/05/mars-workshop.html

Introduction presentation to the MARS workshop. http://antarcticbiodiversity.blogspot.com/2012/05/mars-workshop.html

Published in Technology
  • Full Name Full Name Comment goes here.
    Are you sure you want to
    Your message goes here
    Be the first to comment
    Be the first to like this
No Downloads

Views

Total Views
166
On SlideShare
0
From Embeds
0
Number of Embeds
0

Actions

Shares
Downloads
0
Comments
0
Likes
0

Embeds 0

No embeds

Report content

Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
    No notes for slide
  • \n
  • \n
  • \n
  • \n
  • \n
  • \n
  • \n
  • \n
  • \n

Transcript

  • 1. Welcome to MARS Microbial Antarctic Resource System
  • 2. Welcome to MARS Microbial Antarctic Resource System
  • 3. Logistics• WiFi login/pass• Coffee• Food• Toilets
  • 4. Why are we here?• ANTABIF: Antarctic Biodiversity Information Facility• IPY: International Polar Year• CAML: Census of Antarctic Marine Life• CCAMBIO: Climate Change and Antarctic Microbial Biodiversity• Try to design an integrated information system for Antarctic microbes
  • 5. Proposed approach• 1st day to capture needs and ideas• Interactive• Speakup• Hands-on• Virtual participants• Interdisciplinary
  • 6. Challenges• Different levels of data processing on different data sets• Different regions of the same gene (16S rRNA or 18S rRNA) that are not comparable or alignable vs. nearly full length gene sequences generated in the past.• Different levels of sequencing effort• Different sequencing technologies• Providing raw/semi processed data AND the processed data that publications are built on.• Can consider how ICoMM dealt with this for short-read pyrosequencing data; there are ~ 20 Southern Ocean data sets there in FASTA format and processed format
  • 7. ChallengeTo unify data from different biodiversity domains
  • 8. Expected outcomes• scope MARS• identify prioritized requirements for MARS• reality check: identification of technology and standards• identification of stakeholders• recommendations (white paper)• organize SCAR OSC meeting
  • 9. Today• Intro presentations• Discussions• Examination of actual data• Identification of your needs• Identification of your priorities• (broad) scoping and requirements for MARS
  • 10. Rest of the week• Open• Focused groups, hands-on• Agile, iterative workflow• Input always welcome• Communication @biodiversityaq