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Presentation given at the Expert Group on Birds and Marine Mammals at the SCAR Open Science Conference.

Presentation given at the Expert Group on Birds and Marine Mammals at the SCAR Open Science Conference.

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    140712 antabif egbamm 140712 antabif egbamm Presentation Transcript

    • ANTABIF: EGBAMM, 2012 Antarctic Biodiversity Information FacilitySaturday 14 July 12
    • Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe.Saturday 14 July 12
    • What’s ANTABIF? David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJSaturday 14 July 12
    • What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJSaturday 14 July 12
    • Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of LifeSaturday 14 July 12
    • Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of LifeSaturday 14 July 12
    • Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and openSaturday 14 July 12
    • Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and openSaturday 14 July 12
    • progress: ANTABIF ArchitectureSaturday 14 July 12
    • progress: ANTABIF Architecture • www.biodiversity.aqSaturday 14 July 12
    • progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aqSaturday 14 July 12
    • progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aqSaturday 14 July 12
    • progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aqSaturday 14 July 12
    • progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aqSaturday 14 July 12
    • progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aqSaturday 14 July 12
    • progress: ANTABIF Architecture Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSaturday 14 July 12
    • progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSaturday 14 July 12
    • progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSaturday 14 July 12
    • progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSaturday 14 July 12
    • data.biodiversity.aq • data discovery interface • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentationSaturday 14 July 12
    • Data flow (user’s point of view) Your data DwC-A IPT ANTABIF standardize upload publish publish Data PaperSaturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • Saturday 14 July 12
    • ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information SystemsSaturday 14 July 12
    • ipt.biodiversity.aqSaturday 14 July 12
    • ipt. biodiversity.aqSaturday 14 July 12
    • ipt. biodiversity.aqSaturday 14 July 12
    • ipt. biodiversity.aqSaturday 14 July 12
    • ipt. biodiversity.aqSaturday 14 July 12
    • Reward data publishing Metadata document Data PaperSaturday 14 July 12
    • Proof of conceptSaturday 14 July 12
    • Proof of conceptSaturday 14 July 12
    • Proof of conceptSaturday 14 July 12
    • Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Saturday 14 July 12
    • Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Saturday 14 July 12
    • afg. biodiversity.aq • Identification aid • High quality (useful) pictures • Expert Descriptions • Built on-the-fly from various sources • Generates a pdf for taxa/area of interestSaturday 14 July 12
    • afg. biodiversity.aqSaturday 14 July 12
    • afg. biodiversity.aqSaturday 14 July 12
    • afg. biodiversity.aqSaturday 14 July 12
    • atlas.biodiversity.aqSaturday 14 July 12
    • atlas.biodiversity.aq • Biogeographic Atlas of the Southern OceanSaturday 14 July 12
    • atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 FolioSaturday 14 July 12
    • atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approachSaturday 14 July 12
    • atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versionsSaturday 14 July 12
    • atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are readySaturday 14 July 12
    • Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence recordsSaturday 14 July 12
    • Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence recordsSaturday 14 July 12
    • Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence recordsSaturday 14 July 12
    • R-functions GUI for BRT and GDMSaturday 14 July 12
    • R-functions GUI for BRT and GDMSaturday 14 July 12
    • atlas.biodiversity.aqSaturday 14 July 12
    • atlas.biodiversity.aq • Outcomes of the Villefranche workshopSaturday 14 July 12
    • atlas.biodiversity.aq • Outcomes of the Villefranche workshop • BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant)Saturday 14 July 12
    • atlas.biodiversity.aq • Outcomes of the Villefranche workshop • BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant) • Some models are doing ok, but needs refinementSaturday 14 July 12
    • Arctocephalus gazella Arctocephalus.gazella − BRT −40 −50 Arctocephalus.gazella FALSE TRUE pred −60 lat 0.8 0.6 0.4 0.2 −70 −80 −90 −100 0 100Saturday 14 July 12 lon
    • Hydrurga leptonyx Hydrurga.leptonyx − BRT −40 −50 pred 0.8 0.6 0.4 −60 lat 0.2 Hydrurga.leptonyx FALSE TRUE −70 −80 −90 −100 0 100Saturday 14 July 12 lon
    • Aptenodytes forsteri Aptenodytes.forsteri − BRT −40 −50 pred 0.8 −60 0.6 0.4 lat 0.2 Aptenodytes.forsteri −70 FALSE TRUE −80 −90Saturday 14 July 12 −100 0 100
    • Pygoscelis adeliae Pygoscelis.adeliae − BRT −40 −50 pred 0.8 −60 0.6 0.4 lat 0.2 Pygoscelis.adeliae −70 FALSE TRUE −80 −90Saturday 14 July 12 −100 0 100
    • In the pipelineSaturday 14 July 12
    • atlas.biodiversity.aqSaturday 14 July 12
    • atlas.biodiversity.aq • Next stepsSaturday 14 July 12
    • atlas.biodiversity.aq • Next steps • Consolidate manuscriptsSaturday 14 July 12
    • atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputsSaturday 14 July 12
    • atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of mapsSaturday 14 July 12
    • atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps • PrintSaturday 14 July 12
    • atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps • Print • Dynamic version(s)Saturday 14 July 12
    • Thanks and questions? @biodiversityaq image  ©  NY  Times  Saturday 14 July 12