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Nucleic acids




AP Biology                   2006-2007
Nucleic Acids
                Information
                  storage



AP Biology                    2006-2007
Nucleic Acids
     Function:
           genetic material
             stores information
                genes
                blueprint for building proteins
                    DNA → RNA → proteins
DNA          transfers information
                blueprint for new cells
                blueprint for next generation

AP Biology
      proteins
      proteins
T
                                     G       A
                                 T       C
                             C       A
                         A       G
                         G
                 A
AP Biology           T
             C
Nucleic Acids
     Examples:
            RNA (ribonucleic acid)
              single helix
            DNA (deoxyribonucleic acid)
              double helix
      Structure:
            monomers = nucleotides




AP Biology
                              DNA          RNA
Nucleotides
    3 parts
         nitrogen base (C-N ring)   Nitrogen base
         pentose sugar (5C)            I’m the
                                     A,T,C,G or U
              ribose in RNA              part!
              deoxyribose in DNA
            phosphate (PO4) group
     Are nucleic acids
    charged molecules?




AP Biology
Types of nucleotides              Purine = AG
                                     Pure silver!
    2 types of nucleotides
         different nitrogen bases
         purines

              double ring N base
              adenine (A)
              guanine (G)
            pyrimidines
              single ring N base
              cytosine (C)
              thymine (T)
              uracil (U)
AP Biology
Nucleic polymer
     Backbone
            sugar to PO4 bond
            phosphodiester bond
              new base added to sugar of
               previous base
              polymer grows in one direction
            N bases hang off the
             sugar-phosphate backbone
                  Dangling bases?
               Why is this important?

AP Biology
Pairing of nucleotides
    Nucleotides bond between
       DNA strands
         H bonds
         purine :: pyrimidine

         A :: T

              2 H bonds
            G :: C
              3 H bonds


                 Matching bases?
               Why is this important?
AP Biology
DNA molecule
     Double helix
            H bonds between bases
             join the 2 strands
              A :: T
              C :: G




                      H bonds?
               Why is this important?

AP Biology
Copying DNA
     Replication
            2 strands of DNA helix are
             complementary
              have one, can build other
              have one, can rebuild the
               whole




                  Matching halves?
                    Why is this
                  a good system?

AP Biology
When does a cell copy DNA?
     When in the life of a cell does DNA have
        to be copied?
            cell reproduction
              mitosis
            gamete production
              meiosis




AP Biology
DNA replication
    “It has not escaped our notice that
    the specific pairing we have
    postulated immediately suggests a
    possible copying mechanism for the
    genetic material.”
                         James Watson
                          Francis Crick
                                  1953




AP Biology
1953 | 1962
   Watson and Crick … and others…




AP Biology
1953 | 1962
   Maurice Wilkins… and…




AP Biology
Rosalind Franklin (1920-1958)




AP Biology
Interesting note…
    Ratio of A-T::G-C
      affects stability
      of DNA molecule
            2 H bonds vs. 3 H bonds
            biotech procedures
              more G-C =
               need higher T° to
               separate strands
            high T° organisms
              many G-C
            parasites
              many A-T (don’t know why)


AP Biology
Another interesting note…
     ATP
        Adenosine triphosphate




                modified nucleotide
                  adenine (AMP) + Pi + Pi


                        +          +

AP Biology
HELIXHELIX




AP Biology
Macromolecule
                Review


AP Biology                   2006-2007
Carbohydrates
     Structure / monomer
            monosaccharide
      Function
          energy
          raw materials

          energy storage               glycosidic bond
          structural compounds

      Examples
            glucose, starch, cellulose, glycogen
AP Biology
Lipids
     Structure / building block
            glycerol, fatty acid, cholesterol, H-C chains
     Function
          energy storage
          membranes

          hormones




     Examples                        ester bond (in a fat)
            fat, phospholipids, steroids
AP Biology
Proteins
     Structure / monomer
          amino acids
          levels of structure

      Function
          enzymes        defense
          transport      structure     peptide bond
          signals        receptors
      Examples
            digestive enzymes, membrane
             channels, insulin hormone, actin
AP Biology
Nucleic acids
     Structure / monomer
            nucleotide
      Function
            information storage
             & transfer
      Examples
            DNA, RNA



AP Biology                         phosphodiester bond
Let’s build
         some DNA, baby!




AP Biology
Ghosts of Lectures Past
                    (storage)




AP Biology                             2007-2008
Building the polymer




AP Biology
RNA & DNA
    RNA
            single nucleotide chain
      DNA
            double nucleotide chain
              N bases bond in pairs
               across chains
            spiraled in a double helix
              double helix 1st proposed as structure of DNA in
               1953 by James Watson & Francis Crick
               (just celebrated 50th anniversary in 2003!)

AP Biology
Information polymer
    Function
            series of bases encodes information
              like the letters of a book
            stored information is passed
             from parent to offspring
              need to copy accurately
            stored information = genes
              genetic information

                Passing on information?
                Why is this important?

AP Biology

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Nucleic acids

  • 2. Nucleic Acids Information storage AP Biology 2006-2007
  • 3. Nucleic Acids  Function:  genetic material  stores information  genes  blueprint for building proteins  DNA → RNA → proteins DNA  transfers information  blueprint for new cells  blueprint for next generation AP Biology proteins proteins
  • 4. T G A T C C A A G G A AP Biology T C
  • 5. Nucleic Acids  Examples:  RNA (ribonucleic acid)  single helix  DNA (deoxyribonucleic acid)  double helix  Structure:  monomers = nucleotides AP Biology DNA RNA
  • 6. Nucleotides  3 parts  nitrogen base (C-N ring) Nitrogen base  pentose sugar (5C) I’m the A,T,C,G or U  ribose in RNA part!  deoxyribose in DNA  phosphate (PO4) group Are nucleic acids charged molecules? AP Biology
  • 7. Types of nucleotides Purine = AG Pure silver!  2 types of nucleotides  different nitrogen bases  purines  double ring N base  adenine (A)  guanine (G)  pyrimidines  single ring N base  cytosine (C)  thymine (T)  uracil (U) AP Biology
  • 8. Nucleic polymer  Backbone  sugar to PO4 bond  phosphodiester bond  new base added to sugar of previous base  polymer grows in one direction  N bases hang off the sugar-phosphate backbone Dangling bases? Why is this important? AP Biology
  • 9. Pairing of nucleotides  Nucleotides bond between DNA strands  H bonds  purine :: pyrimidine  A :: T  2 H bonds  G :: C  3 H bonds Matching bases? Why is this important? AP Biology
  • 10. DNA molecule  Double helix  H bonds between bases join the 2 strands  A :: T  C :: G H bonds? Why is this important? AP Biology
  • 11. Copying DNA  Replication  2 strands of DNA helix are complementary  have one, can build other  have one, can rebuild the whole Matching halves? Why is this a good system? AP Biology
  • 12. When does a cell copy DNA?  When in the life of a cell does DNA have to be copied?  cell reproduction  mitosis  gamete production  meiosis AP Biology
  • 13. DNA replication “It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material.” James Watson Francis Crick 1953 AP Biology
  • 14. 1953 | 1962 Watson and Crick … and others… AP Biology
  • 15. 1953 | 1962 Maurice Wilkins… and… AP Biology
  • 17. Interesting note…  Ratio of A-T::G-C affects stability of DNA molecule  2 H bonds vs. 3 H bonds  biotech procedures  more G-C = need higher T° to separate strands  high T° organisms  many G-C  parasites  many A-T (don’t know why) AP Biology
  • 18. Another interesting note…  ATP Adenosine triphosphate  modified nucleotide  adenine (AMP) + Pi + Pi + + AP Biology
  • 20. Macromolecule Review AP Biology 2006-2007
  • 21. Carbohydrates  Structure / monomer  monosaccharide  Function  energy  raw materials  energy storage glycosidic bond  structural compounds  Examples  glucose, starch, cellulose, glycogen AP Biology
  • 22. Lipids  Structure / building block  glycerol, fatty acid, cholesterol, H-C chains  Function  energy storage  membranes  hormones  Examples ester bond (in a fat)  fat, phospholipids, steroids AP Biology
  • 23. Proteins  Structure / monomer  amino acids  levels of structure  Function  enzymes defense  transport structure peptide bond  signals receptors  Examples  digestive enzymes, membrane channels, insulin hormone, actin AP Biology
  • 24. Nucleic acids  Structure / monomer  nucleotide  Function  information storage & transfer  Examples  DNA, RNA AP Biology phosphodiester bond
  • 25. Let’s build some DNA, baby! AP Biology
  • 26. Ghosts of Lectures Past (storage) AP Biology 2007-2008
  • 28. RNA & DNA  RNA  single nucleotide chain  DNA  double nucleotide chain  N bases bond in pairs across chains  spiraled in a double helix  double helix 1st proposed as structure of DNA in 1953 by James Watson & Francis Crick (just celebrated 50th anniversary in 2003!) AP Biology
  • 29. Information polymer  Function  series of bases encodes information  like the letters of a book  stored information is passed from parent to offspring  need to copy accurately  stored information = genes  genetic information Passing on information? Why is this important? AP Biology

Editor's Notes

  1. Isn’t this a great illustration!?
  2. DNA & RNA are negatively charged: Don’t cross membranes. Contain DNA within nucleus Need help transporting mRNA across nuclear envelope. Also use this property in gel electrophoresis.
  3. The 2 strands are complementary. One becomes the template of the other & each can be a template to recreate the whole molecule.
  4. H bonds = biology’s weak bond • easy to unzip double helix for replication and then re-zip for storage • easy to unzip to “read” gene and then re-zip for storage
  5. when cells divide, they must duplicate DNA exactly for the new “daughter” cells Why is this a good system?
  6. when cells divide, they must duplicate DNA exactly for the new “daughter” cells Why is this a good system?
  7. The greatest understatement in biology!
  8. Discovered & published in 1953 Nobel Prize in 1962: Watson, Crick, Wilkins
  9. A chemist by training, Franklin had made original and essential contributions to the understanding of the structure of graphite and other carbon compounds even before her appointment to King's College. Unfortunately, her reputation did not precede her. James Watson's unflattering portrayal of Franklin in his account of the discovery of DNA's structure, entitled "The Double Helix," depicts Franklin as an underling of Maurice Wilkins, when in fact Wilkins and Franklin were peers in the Randall laboratory. And it was Franklin alone whom Randall had given the task of elucidating DNA's structure. The technique with which Rosalind Franklin set out to do this is called X-ray crystallography. With this technique, the locations of atoms in any crystal can be precisely mapped by looking at the image of the crystal under an X-ray beam. By the early 1950s, scientists were just learning how to use this technique to study biological molecules. Rosalind Franklin applied her chemist's expertise to the unwieldy DNA molecule. After complicated analysis, she discovered (and was the first to state) that the sugar-phosphate backbone of DNA lies on the outside of the molecule. She also elucidated the basic helical structure of the molecule. After Randall presented Franklin's data and her unpublished conclusions at a routine seminar, her work was provided - without Randall's knowledge - to her competitors at Cambridge University, Watson and Crick. The scientists used her data and that of other scientists to build their ultimately correct and detailed description of DNA's structure in 1953. Franklin was not bitter, but pleased, and set out to publish a corroborating report of the Watson-Crick model. Her career was eventually cut short by illness. It is a tremendous shame that Franklin did not receive due credit for her essential role in this discovery, either during her lifetime or after her untimely death at age 37 due to cancer.
  10. At the foundation of biology is chemistry!!
  11. All other biomolecules we spoke about served physical or chemical functions. DNA & RNA are information storage molecules. DNA well-suited for an information storage molecule: chemically stable stores information in the varying sequence of nucleotides (the genetic code) its coded sequence can be copied exactly by the synthesis of complementary strands; easily unzipped & re-zipped without damage (weak H bonds) damage to one strand can be repaired by addition of bases that match the complementary strand