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All applications All applications Document Transcript

  • WikiPrint - from Polar TechnologiesKaust Research Computing All Available ApplicationsClick on the application to get more information on the application and how to use it on various platforms.Abaqus Abaqus is a software package for finite element analysis. Discovery Studio is a life science modeling and simulation suite ofAccelrys - Discovery Studio applications focused on optimizing the drug discovery process. Materials Studio is a comprehensive materials modeling and simulationAccelrys - Materials Studio application designed for scientists in chemicals and materials R&D as well as pharmaceuticals development. ANSYS is an engineering simulation software that offers a diverse set ofANSYS tools designed for engineering collaboration. AspenTech has a broad footprint of process optimization solutions with products spanning across engineering, manufacturing, and supply chain.AspenTech Enabling the creation and maintainence of sustainable best practices while driving operational excellence. AutoCAD is a 3D CAD design, drafting, modeling, architectural drawing,AutoCAD and engineering software.. Avizo is a 3D Analysis software for visualizing, manipulating, andAvizo understanding scientific and industrial data. CAD design, drafting, modeling, architectural drawing, and engineering software.. BWA (Burrows-Wheeler Aligner) is an efficient program that alignsBWA relatively short nucleotide sequences against a long reference sequence such as the human genome. CUDA is NVIDIA?s parallel computing architecture that enables dramaticCUDA increases in computing performance by harnessing the power of the GPU (graphics processing unit). Cadence provides front-to-back design tools and services for all aspects ofCadence semiconductor design. The Cambridge Structural Database (CSD) is a repository of smallCambridge Structural Database molecule crystal structures. CHEMCAD is a software tool for chemical, petrochemical, pharmaceutical,CHEMCAD mechanical, and environment process simulation. ChemDraw is a molecule editor, and is part of the ChemOffice suite ofChemDraw programs. ChemOffice is a powerful suite of software, consisting of ChemDraw, Chem3D, ChemFinder and ChemACX for chemists, BioOffice, BioAssay,ChemOffice BioViz, and BioDraw for biologists, and Inventory, E-Notebook and The Merck Index for scientists. CHEMKIN-PRO is a software tool for solving complex chemical kineticsCHEMKIN-PRO problems. CodonCode Aligner is a software for DNA sequence assembly, alignment,CodonCode Aligner contig editing, and mutation detection. COMSOL Multiphysics is a finite element analysis, solver and simulationCOMSOL Multiphysics software for various physics and engineering applications, especially coupled phenomena (multiphysics). CoventorWare is comprised of four major modules that can be usedCoventor-CoventorWare individually to complement an existing design flow, or jointly to provide a complete MEMS (micro-electro-mechanical systems) design flow. SEMulator3D emulates Silicon processing in software, allowing you toCoventor-SEMulator3D fabricate your device in a virtual 3D environment. 1
  • WikiPrint - from Polar Technologies GenVision is a genomic visualization software package that is fullyDNA Star - GenVision integrated with Lasergene and is designed to support easy generation of publication quality graphics and maps. Lasergene is a comprehensive DNA and protein sequence analysisDNA Star - Lasergene software suite. SeqMan NGen allows life scientists to perform fast and accurate sequenceDNA Star - NGen alignment and assembly. Echoview is an advanced hydroacoustic data-processing application forEchoview fisheries scientists and environmental managers who need to monitor and understand aquatic environments. EnSight is a powerful software package for the postprocessing,EnSight visualization, and animation of complex datasets. FlowJo software reads flow cytometry data and facilitates complex dataFlowJo analysis in a graphically intuitive way. Gamma is a radar remote sensing software package and its objective is toGamma conduct research studies and to provide consulting and processing services in the field of microwave remote sensing. GaussView is a graphical user interface designed to help you prepareGaussView input for submission to Gaussian and to examine graphically the output that Gaussian produces. Starting from the fundamental laws of quantum mechanics, Gaussian predicts the energies, molecular structures, vibrational frequencies, andGaussian molecular properties of molecules and reactions in a wide variety of chemical environments. GeneSpring GX provides powerful, accessible statistical tools for fastGeneSpring visualization and analysis of expression and genomic structural variation data. Geomagic Studio transforms 3D scan data and polygon meshes intoGeomagic Studio accurate 3D digital models for reverse engineering, product design, rapid prototyping, and analysis. Genscan is a general-purpose gene identification program which analyzesGENSCAN genomic DNA sequences from a variety of organisms including human, other vertebrates, invertebrates and plants. GROMACS is a versatile package to perform molecular dynamics, i.e.GROMACS simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GSFLX is a Genome Sequencer system. It enables the sequencing ofGSFLX many sample types, including short DNA fragments, amplicons, shotgun fragments and paired ends. Hadoop develops open-source software for reliable, scalable, distributedHadoop computing.HFSS HFSS is a simulation tool for 3D full-wave electromagnetic field simulation. HyperChem is a sophisticated molecular modeling environment, featuringHyperChem the ability to do quantum chemical calculations, molecular mechanics, and dynamics calculations as well as 3D visualizations and animation. HyperMesh is a high-performance finite element pre-processor thatHyperMesh provides a highly interactive and visual environment to analyze product design performance. I-DEAS is a computer-aided design software package that provides aI-DEAS NX model-based approach to the product development process. 2
  • WikiPrint - from Polar Technologies IDL is scientific programming language used across disciplines to createIDL meaningful visualizations out of complex numerical data. IMSL Fortran Numerical Library is the standard for high performanceIMSL computing commercial mathematics and statistics libraries Intel® Professional Edition Compilers include advanced optimizationIntel Compilers features, multithreading capabilities, and support for Intel® processors and compatible processors. InterProScan is a tool that combines different protein signature recognitionInterProScan methods native to the InterPro? member databases into one resource with look up of corresponding InterPro? and GO annotation.. LAMMPS is a classical molecular dynamics code, and an acronym forLAMMPS Large-scale Atomic/Molecular Massively Parallel Simulator. LLG is a tool for designing micromagnetic structure in ferromagnetic films,LLG Micromagnetics Simulator on ferromagnetic surfaces, and in magnetic devices and materials. LabVIEW is a graphical programming environment to developLabVIEW sophisticated measurement, test, and control systems using intuitive graphical icons and wires that resemble a flowchart. ANSYS Maxwell® is the premier electromagnetic field simulation software for engineers tasked with designing and analyzing 3-D and 2-DMaxwell electromagnetic and electromechanical devices such as motors, actuators, transformers, sensors and coils. Medici is a 2D device simulator that models the electrical, thermal andMedici optical characteristics of semiconductor devices. MIRA is a whole genome shotgun and EST sequence assembler forMIRA Sanger, 454, Solexa (Illumina) and PacBio data. MODFLOW-SURFACT Flow is groundwater modeling software used toMODFLOW produce 3D finite-difference groundwater flow and transport models. Molecular Modeling Pro provides features in PC-based molecularMolecular Modeling Pro modeling. NAMD is a parallel, object-oriented molecular dynamics code designed forNAMD high-performance simulation of large biomolecular systems. NCBI-BLAST, (Basic Local Alignment Search Tool) finds regions of local similarity between sequences. The program compares nucleotide orNCBI-BLAST & BLAST+ protein sequences to sequence databases and calculates the statistical significance of matches. NextGENe is a bioinformatics tool compatible with the Applied BioSystems SOLiD? System, Roche Genome Sequencer FLX?, and IlluminaNextGENe Genome® Analyzer and is designed in a biologist friendly Windows environment. NX-CAD from Siemens PLM Software is a computer-aided design softwareNX-CAD package that provides a model-based approach to the product development process. NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computationalNWChem chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. SPSS (PASW) is a Predictive Analytics Software suite that includes tools for data collection, modeling, statistical analyses, and deployment productsSPSS (PASW) that integrate analytical results into decision making in business processes. 3 View slide
  • WikiPrint - from Polar Technologies The PGI Compilers can be used to compile, debug, optimize, and profilePGI Compilers serial and parallel applications for x86 or x64 processor-based systems. ParaView is an open-source, multi-platform data analysis and visualizationParaView application. Parallels desktop for Mac is a software providing hardware virtualization forParallels Macintosh computers with Intel processor. PRIMER 6 is a collection of specialist routines for analyzing species orPRIMER sample abundance (biomass). Prism is a powerful combination of biostatistics, curve fitting (nonlinearPrism regression) and scientific graphing in one comprehensive program. QUANTUM-ESPRESSO is an integrated suite of computer codes forQUANTUM-ESPRESSO electronic-structure calculations and materials modeling at the nanoscale.R R is a language and environment for statistical computing and graphics. RSoft Design Group offers a full spectrum of photonic and network designRSoft automation products. Schrödinger provides accurate, reliable, and high performanceSchrödinger computational technology to solve real-world problems in life science research. SAM (Sequence Alignment / Map) is a flexible generic format for storingSAMtools nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. SMS (TABS) is a software solution for efficiently managing the entireSMS (TABS) surface water modeling process: from importing topographic and hydraulic data to visualizing and analyzing solutions. In Scientific WorkPlace, you can typeset complex technical documentsScientific WorkPlace with LaTeX, the industry standard for mathematics typesetting.Sequencher Sequencher is a DNA sequence assembly and analysis software. SigmaPlot is a scientific graphing and data analysis software package thatSigmaPlot produces high-quality graphs to facilitate data visualization, and offers advanced statistical analysis tools.SolidWorks SolidWorks is a 3D mechanical CAD (computer-aided design) program. SonarX is a scientific echo sounder post processing tool working withSonar5 single and split beam echo sounders. Statistica provides the most comprehensive array of data analysis, dataStatistica management, data mining, and data visualization procedures. Tanner EDA is the catalyst for innovation for the design, layout andTanner EDA verification of analog and mixed-signal integrated circuits. Tecplot 360 is a Computational Fluid Dynamics (CFD) and numericalTecplot simulation software package used in post-processing simulation results. TopSpin is our software package for acquiring, processing and analyzingTopSpin NMR data. TotalView is a GUI-based source code defect analysis tool that givesTotalView unprecedented control over processes and thread execution and visibility into program state and variables. The goal of UNITE is to provide a robust, portable, and integrated environment for the debugging and performance analysis of parallel MPI,UNITE OpenMP, and hybrid MPI/OpenMP programs on high-performance compute clusters. It consists of a set of well-accepted portable, mostly open-source tools. 4 View slide
  • WikiPrint - from Polar Technologies VAMP/VASP is a package for performing ab-initio quantum-mechanicalVASP molecular dynamics (MD) using pseudopotentials and a plane wave basis set.Velvet Velvet is a DNA sequence assembly and analysis software. VisIt is a free interactive parallel visualization and graphical analysis toolVisIt for viewing scientific data on Unix and PC platforms. VisIt was developed to visualize and analyze the results of terascale simulations. VMD is a molecular visualization program for displaying, animating, andVMD analyzing large biomolecular systems using 3-D graphics and built-in scripting. WIEN2K allows to perform electronic structure calculations of solids usingWIEN2k density functional theory (DFT). XCrySDen is a crystalline and molecular structure visualisation program, which aims at display of isosurfaces and contours, which can beXCrySDen superimposed on crystalline structures and interactively rotated and manipulated. Maple is an integrated mathematical software package that can be used toMaple obtain symbolic and numerical solutions to a wide variety of mathematical problems. Mathematica is a fully integrated environment for technical computing,Mathematica combining interactive calculation (both numeric and symbolic), visualization tools, and a complete programming environment. MATLAB is a high-level technical computing language and interactiveMATLAB environment for algorithm development, data visualization, data analysis, and numeric computation.XV XV is a utility for displaying a variety of image formats.Feedback / Questionithelpdesk@kaust.edu.sa (Use keyword "Research Computing") 5