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Talk presented at Evolution 2012 conference in the SSB Symposium: "New phylogenetic methods for quantitative trait evolution" ]]>

Talk presented at Evolution 2012 conference in the SSB Symposium: "New phylogenetic methods for quantitative trait evolution" ]]>

Background/Question/Methods The recognition that ecosystems can undergo sudden shifts to alternate, less desirable stable states has led to the desire to identify early warning signs of these impending collapses. This search has been motivated by the mathematics of bifurcations, in which sudden shifts result not from direct perturbations to the state (i.e. the population abundance, through mechanisms such as over-harvesting) but to a slowly changing parameter that impacts the system stability. While these collapses cannot be anticipated by observing only the mean dynamics (as described by a deterministic model), signs of the impending collapse are expressed in the random perturbations, or noise, inherent in real systems. The mathematical theory of early warning signs exploits this fact by seeking to detect patterns such as “critical slowing down” of these perturbations due to the gradual loss of stability which leads to a bifurcation. While much attention has been given to emphasizing the existence both of sudden collapses and of signs of critical slowing down, little attention has been paid to its detection. Faced with only finite data, any method risks both false alarms and failed detection events. We believe that weighing these risks must be the burden of management policy, while research must first provide a reliable way to quantify the relative risks of each. We present a method which quantifies this risk and show how to decrease the uncertainty inherent in common summary-statistic approaches through the use of a likelihood based modeling approach. Results/Conclusions We demonstrate that commonly used correlation tests applied to summary statistics such as autocorrelation and variance are both inappropriate and insufficient tests of early warning signals. Our method estimates directly the parameters of a generalized model of the bifurcation postulated by early warning signals theory, with and without the presence of a gradual change leading towards collapse. Using Monte Carlo simulation we generate the distribution of warning-signal statistics expected under each model. From this we can quantify the risk of false alarms and missed detection. We then show how applying this approach to the data directly rather than the summary statistic increases the power of detection. We illustrate the approach in both simulated and empirical data of sudden ecological shifts.]]>

Background/Question/Methods The recognition that ecosystems can undergo sudden shifts to alternate, less desirable stable states has led to the desire to identify early warning signs of these impending collapses. This search has been motivated by the mathematics of bifurcations, in which sudden shifts result not from direct perturbations to the state (i.e. the population abundance, through mechanisms such as over-harvesting) but to a slowly changing parameter that impacts the system stability. While these collapses cannot be anticipated by observing only the mean dynamics (as described by a deterministic model), signs of the impending collapse are expressed in the random perturbations, or noise, inherent in real systems. The mathematical theory of early warning signs exploits this fact by seeking to detect patterns such as “critical slowing down” of these perturbations due to the gradual loss of stability which leads to a bifurcation. While much attention has been given to emphasizing the existence both of sudden collapses and of signs of critical slowing down, little attention has been paid to its detection. Faced with only finite data, any method risks both false alarms and failed detection events. We believe that weighing these risks must be the burden of management policy, while research must first provide a reliable way to quantify the relative risks of each. We present a method which quantifies this risk and show how to decrease the uncertainty inherent in common summary-statistic approaches through the use of a likelihood based modeling approach. Results/Conclusions We demonstrate that commonly used correlation tests applied to summary statistics such as autocorrelation and variance are both inappropriate and insufficient tests of early warning signals. Our method estimates directly the parameters of a generalized model of the bifurcation postulated by early warning signals theory, with and without the presence of a gradual change leading towards collapse. Using Monte Carlo simulation we generate the distribution of warning-signal statistics expected under each model. From this we can quantify the risk of false alarms and missed detection. We then show how applying this approach to the data directly rather than the summary statistic increases the power of detection. We illustrate the approach in both simulated and empirical data of sudden ecological shifts.]]>

My lightning talk at #ievobio 2011]]>

My lightning talk at #ievobio 2011]]>

I present a model that generalizes common comparative methods. I highlight some of the dangers of more complex methods and outline ways of addressing these challenges.]]>

I present a model that generalizes common comparative methods. I highlight some of the dangers of more complex methods and outline ways of addressing these challenges.]]>

Final presentation of my summer work at IIASA]]>

Final presentation of my summer work at IIASA]]>

Progress report to Dieckmann group while in Vienna]]>

Progress report to Dieckmann group while in Vienna]]>

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Presentation to the Center for Population Biology, November 2010]]>

Presentation to the Center for Population Biology, November 2010]]>

I explore tools and applications of the van Kampen expansion of the stochastic master equation in several areas of population biology. I highlight fluctuation-dissipation and fluctuation-enhancement regimes, using information from noise to help model choice, and examples where noise changes the macroscopic dynamics of a system. ]]>

I explore tools and applications of the van Kampen expansion of the stochastic master equation in several areas of population biology. I highlight fluctuation-dissipation and fluctuation-enhancement regimes, using information from noise to help model choice, and examples where noise changes the macroscopic dynamics of a system. ]]>

Talk given at the annual Evolution meeting in Portland, Oregon, June 26th]]>

Talk given at the annual Evolution meeting in Portland, Oregon, June 26th]]>

5 minute lightning talk presented at iEvoBio conference in Portland, Oregon, June 2010]]>

5 minute lightning talk presented at iEvoBio conference in Portland, Oregon, June 2010]]>

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