Chempedia
A Social Medium for Chemical Information

           American Chemical Society
                March 24, 2010


...
Volunteer CAS Abstractors




Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193
Volunteer CAS Abstractors

                                                                                             40...
FAIL
<html>
  <!-- ... -->

 <img src="http://wikipedia.org/Venlafaxine.png">
 </img>

  <!-- ... -->
</html>
{{drugbox |                       > <PUBCHEM_GENERIC_REGISTRY_NAME>
| CAS_number = 54910-89-3         54910-89-3
| licence...
{{drugbox |                       > <PUBCHEM_GENERIC_REGISTRY_NAME>
| CAS_number = 54910-89-3         54910-89-3
| licence...
Chempedia1.0
Limitations
Limitations

     •   Read-only
Limitations

     •   Read-only

     •   Low user involvement
Limitations

     •   Read-only

     •   Low user involvement

     •   Reliance on non-
         authoritative CAS Numbe...
The Missing Service
The Missing Service
          •   On-Demand Unique ID
The Missing Service
          •   On-Demand Unique ID

          •   Expose Canonical URL
The Missing Service
          •   On-Demand Unique ID

          •   Expose Canonical URL

          •   Support Synonyms
The Missing Service
          •   On-Demand Unique ID

          •   Expose Canonical URL

          •   Support Synonyms
...
The Missing Service
          •   On-Demand Unique ID

          •   Expose Canonical URL

          •   Support Synonyms
...
551
The New Chempedia
Room For
   Improvement
• Automate substance approval
• Multicomponent substances
• Batch registration
• URL-substance ass...
Level 1: Embrace the Web
Level 2: Commit to Free
Endangered Species?
Level 3: Users Rule
Level 4: Game Mechanics

             • Points
             • Feedback
             • Turn-Taking
             • Customiza...
Level 4: Game Mechanics

             • Points
             • Feedback
             • Turn-Taking
             • Customiza...
Level 4: Game Mechanics

             • Points
             • Feedback
             • Turn-Taking
             • Customiza...
Level 4: Game Mechanics

             • Points
             • Feedback
             • Turn-Taking
             • Customiza...
Level 4: Game Mechanics

             • Points
             • Feedback
             • Turn-Taking
             • Customiza...
Chempedia Lab
metamolecular.com
Acknowledgements
  • Chempedia/Lab Users
  • Egon Willighagen
http://chempedia.com

http://lab.chempedia.com

 http://depth-first.com
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
Chempedia: A Social Medium for Chemical Information
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Chempedia: A Social Medium for Chemical Information

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Chempedia and Chempedia Lab as test cases for new models of scientific communication.

This talk was given at the Spring ACS in San Francisco, California on March 24, 2010.

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Chempedia: A Social Medium for Chemical Information

  1. 1. Chempedia A Social Medium for Chemical Information American Chemical Society March 24, 2010 Rich Apodaca Founder & CEO Metamolecular, LLC
  2. 2. Volunteer CAS Abstractors Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193
  3. 3. Volunteer CAS Abstractors 4000 3000 2000 1000 1907 1917 1927 0 1937 1947 1957 1967 1977 1979 Baker et al. J. Chem. Inf. Comput. Sci. 1980, 193
  4. 4. FAIL <html> <!-- ... --> <img src="http://wikipedia.org/Venlafaxine.png"> </img> <!-- ... --> </html>
  5. 5. {{drugbox | > <PUBCHEM_GENERIC_REGISTRY_NAME> | CAS_number = 54910-89-3 54910-89-3 | licence_US = Fluoxetine | bioavailability = 72% > <PUBCHEM_SUBSTANCE_ID> | excretion = Kidneys 80% 56313632 | legal_status = Rx Only (U.S.) }} > <PUBCHEM_CID_ASSOCIATIONS> 3386 1
  6. 6. {{drugbox | > <PUBCHEM_GENERIC_REGISTRY_NAME> | CAS_number = 54910-89-3 54910-89-3 | licence_US = Fluoxetine | bioavailability = 72% > <PUBCHEM_SUBSTANCE_ID> | excretion = Kidneys 80% 56313632 | legal_status = Rx Only (U.S.) }} > <PUBCHEM_CID_ASSOCIATIONS> 3386 1
  7. 7. Chempedia1.0
  8. 8. Limitations
  9. 9. Limitations • Read-only
  10. 10. Limitations • Read-only • Low user involvement
  11. 11. Limitations • Read-only • Low user involvement • Reliance on non- authoritative CAS Number associations
  12. 12. The Missing Service
  13. 13. The Missing Service • On-Demand Unique ID
  14. 14. The Missing Service • On-Demand Unique ID • Expose Canonical URL
  15. 15. The Missing Service • On-Demand Unique ID • Expose Canonical URL • Support Synonyms
  16. 16. The Missing Service • On-Demand Unique ID • Expose Canonical URL • Support Synonyms • Integrate Peer-Review
  17. 17. The Missing Service • On-Demand Unique ID • Expose Canonical URL • Support Synonyms • Integrate Peer-Review • Free
  18. 18. 551
  19. 19. The New Chempedia
  20. 20. Room For Improvement • Automate substance approval • Multicomponent substances • Batch registration • URL-substance associations • Multilanguage synonyms
  21. 21. Level 1: Embrace the Web
  22. 22. Level 2: Commit to Free
  23. 23. Endangered Species?
  24. 24. Level 3: Users Rule
  25. 25. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/
  26. 26. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/
  27. 27. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/
  28. 28. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/
  29. 29. Level 4: Game Mechanics • Points • Feedback • Turn-Taking • Customization http://mixergy.com/amy-jo-kim/
  30. 30. Chempedia Lab
  31. 31. metamolecular.com
  32. 32. Acknowledgements • Chempedia/Lab Users • Egon Willighagen
  33. 33. http://chempedia.com http://lab.chempedia.com http://depth-first.com
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