Sequence Services Phase 2--Genestack

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Misha Kapushesky introduces Genestack's contribution to the proof of concept developed in its consortium with Constellation Technologies for Phase 2 of the Pistoia Alliance Sequence Services project. …

Misha Kapushesky introduces Genestack's contribution to the proof of concept developed in its consortium with Constellation Technologies for Phase 2 of the Pistoia Alliance Sequence Services project. The presentation was delivered at the Pistoia Alliance Conference in Boston, MA, on April 24, 2012.

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  • 1. GENOMICSAPPLICATIONS PLATFORM
  • 2. GENESTACK PLATFORMObjective universal genomics applications platform existing tool integrationReason & new tool development provide full set ofApproach building blocks
  • 3. GENESTACK PLATFORM Sharing Public dataSecurity Applications HPC Private data
  • 4. GENESTACK PLATFORMData private & secure sharing free public data format-independent custom data types
  • 5. GENESTACK PLATFORM Applicationsefficient computationunified user interfacescriptabletrustedapplication SDK
  • 6. Genestack Limited, Salisbury Telephone +447990705531, Registered in England and Wales CompanyHouse, Station Road, Cambridge, Email: info@genestack.com, No. 7778793GENESTACKCB1 2LA, United Kingdom Twitter: @genestackltdwww.genestack.comGENESTACKwww.genestack.comGENOMICS Universal genomics data platform. Secure hosting and team sharing of Big Data genomics experiments. Bioinformatics applications ecosystem in theOPERATINGGENOMICS Universal genomics data platform. Securedata from public repositories. Data cloud. Free access to curated genomic hosting and team sharing of Big Data genomics application development. End-to-end sequencing service. curation and experiments. Bioinformatics applications ecosystem in theSYSTEMOPERATING cloud. Free access to curated genomic data from public repositories. Data Applications SDK & marketplace. Fixed monthly subscription. curation and application development. End-to-end sequencing service.SYSTEM Applications SDK & marketplace. Fixed monthly subscription.Solutions to Six Problems With Genomic Data and Applications in the EnterpriseSolutions to Six Problems With Genomic Data and Applications in the Enterprise1. Managing Genomic Data Storage Costs Interesting: NGS produces files hundreds of gigabytes in size; encrypting/decrypting them is slow and CPU- Problem: Sequencing gets cheaper per genome, intensive, while bioinformatics tools can take hours or1. Managing Genomic Dataper dollar, but data storage producing more gigabases Storage Costs Interesting: NGS produces files hundreds of gigabytes days to run. We have thought of ways to maintain and processing costs are in fact growing. In-house in size; encrypting/decrypting them is slow and CPU-Problem: Sequencing gets cheaper per genome, security even for such cases. intensive, while bioinformatics tools can take hours orproducing at cluster World:pertake large capitalCloud Computing Track storage and solutions dollar, but data more gigabases 3:40pm Apr 26 instorageSpeaking Bio-IT operating costs. expenditures and big in fact growing. In-house days Using Public Data with Proprietary Kapushesky, CEO Misha Data Cost- 3. to run. We have thought of ways to maintainand processing costs are security even for such cases. effectively misha@genestack.comstorage and cluster solutions take large capital your data Solution: We offer a scalable way part in ourLaunch Q3 2012. Want to take to manage early access programme? Data with Proprietary Data Cost-expenditures processing costs on our cloud-based Twitter @genestackltd 3. Problem: To use data from 1000 Genomes, GEO, Ensembl Using Public storage and and big operating costs.