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Swan Annotation Tool - Text Mining

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Swan Annotation Framework: running text mining services and curating the results.

Swan Annotation Framework: running text mining services and curating the results.

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  • 1. SWAN Annotation Framework and Text Mining Services
    Paolo Ciccarese, PhD
    Oct 25, 2010
    paolo.ciccarese@gmail.com
    1
    Mass General Hospital
    Harvard Medical School
  • 2. Running text mining services
    2
  • 3. 3 – Loading a news
  • 4. 4 – Selecting one or more of the available text mining services
  • 5. 5 – Running the selected text mining services
  • 6. 6 – Display of the results
  • 7. 7 – List of the results in the summary panel
  • 8. 8 – Display of items in text through the summary panel
  • 9. 9 - Sets summary panel
  • 10. 10 – Display of all the items belonging to the selected set
  • 11. 11 – Curation of one annotation item
  • 12. 12 – The returned term is too broad
  • 13. 13 – Introducing a comment in the curation token
  • 14. 14 – Applying the curation token
  • 15. 15 – Another example of curation
  • 16. 16 – Another example of curation
  • 17. 17 – First term is an exact match
  • 18. Extending the automatically generated set
    18
  • 19. 19 – For adding annotation on the text span ‘APP’ it is necessary to select the text and…
  • 20. 20 - … attach the right term
  • 21. 21 – New annotation added to the NCBO result set
  • 22. 22 – Displaying the new annotation in context
  • 23. 23 – Displaying all the items of the set