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Swan Annotation Tool - Text Mining
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Swan Annotation Tool - Text Mining

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Swan Annotation Framework: running text mining services and curating the results.

Swan Annotation Framework: running text mining services and curating the results.

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  • 1. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD SWAN Annotation Framework and Text Mining Services Paolo Ciccarese, PhD Oct 25, 2010 1 Mass General Hospital Harvard Medical School paolo.ciccarese@gmail.com
  • 2. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD Running text mining services 2
  • 3. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 3 – Loading a news
  • 4. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 4 – Selecting one or more of the available text mining services
  • 5. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 5 – Running the selected text mining services
  • 6. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 6 – Display of the results
  • 7. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 7 – List of the results in the summary panel
  • 8. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 8 – Display of items in text through the summary panel
  • 9. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 9 - Sets summary panel
  • 10. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 10 – Display of all the items belonging to the selected set
  • 11. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 11 – Curation of one annotation item
  • 12. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 12 – The returned term is too broad
  • 13. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 13 – Introducing a comment in the curation token
  • 14. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 14 – Applying the curation token
  • 15. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 15 – Another example of curation
  • 16. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 16 – Another example of curation
  • 17. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 17 – First term is an exact match
  • 18. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD Extending the automatically generated set 18
  • 19. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 19 – For adding annotation on the text span ‘APP’ it is necessary to select the text and…
  • 20. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 20 - … attach the right term
  • 21. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 21 – New annotation added to the NCBO result set
  • 22. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 22 – Displaying the new annotation in context
  • 23. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 23 – Displaying all the items of the set