© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
SWAN Annotation Framework and
Te...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
Running text mining services
2
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
3 – Loading a news
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
4 – Selecting one or more of the...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
5 – Running the selected text mi...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
6 – Display of the results
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
7 – List of the results in the s...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
8 – Display of items in text thr...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
9 - Sets summary panel
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
10 – Display of all the items be...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
11 – Curation of one annotation ...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
12 – The returned term is too br...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
13 – Introducing a comment in th...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
14 – Applying the curation token
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
15 – Another example of curation
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
16 – Another example of curation
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
17 – First term is an exact match
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
Extending the automatically
gene...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
19 – For adding annotation on th...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
20 - … attach the right term
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
21 – New annotation added to the...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
22 – Displaying the new annotati...
© Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD
23 – Displaying all the items of...
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Swan Annotation Tool - Text Mining

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Swan Annotation Framework: running text mining services and curating the results.

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Transcript of "Swan Annotation Tool - Text Mining"

  1. 1. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD SWAN Annotation Framework and Text Mining Services Paolo Ciccarese, PhD Oct 25, 2010 1 Mass General Hospital Harvard Medical School paolo.ciccarese@gmail.com
  2. 2. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD Running text mining services 2
  3. 3. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 3 – Loading a news
  4. 4. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 4 – Selecting one or more of the available text mining services
  5. 5. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 5 – Running the selected text mining services
  6. 6. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 6 – Display of the results
  7. 7. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 7 – List of the results in the summary panel
  8. 8. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 8 – Display of items in text through the summary panel
  9. 9. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 9 - Sets summary panel
  10. 10. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 10 – Display of all the items belonging to the selected set
  11. 11. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 11 – Curation of one annotation item
  12. 12. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 12 – The returned term is too broad
  13. 13. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 13 – Introducing a comment in the curation token
  14. 14. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 14 – Applying the curation token
  15. 15. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 15 – Another example of curation
  16. 16. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 16 – Another example of curation
  17. 17. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 17 – First term is an exact match
  18. 18. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD Extending the automatically generated set 18
  19. 19. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 19 – For adding annotation on the text span ‘APP’ it is necessary to select the text and…
  20. 20. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 20 - … attach the right term
  21. 21. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 21 – New annotation added to the NCBO result set
  22. 22. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 22 – Displaying the new annotation in context
  23. 23. © Massachusetts General Hospital, All Rights Reserved Oct 25, 2010 - Paolo Ciccarese, PhD 23 – Displaying all the items of the set

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