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SWAN, HyQue and Nanopublications
 

SWAN, HyQue and Nanopublications

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Claim #1: Intramembranous Aβ behaves as chaperones of other membrane proteins

Claim #1: Intramembranous Aβ behaves as chaperones of other membrane proteins

An example of application of the nanopublications approach to represent AlzSWAN content.

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    SWAN, HyQue and Nanopublications SWAN, HyQue and Nanopublications Presentation Transcript

    • AlzSWAN, HyQueand nanopublications
      An example:
      Claim #1: Intramembranous Aβ behaves as chaperones of other membrane proteins
      Paolo Ciccarese, PhD
      February 25, 2011
    • A claim taken from AlzSWAN
      URL: http://tinyurl.com/4h2am3a
    • The claim by the author in SWAN
      rdf:type
      <http://tinyurl.com/4h2am3a>
      swande:Claim
      dct:title
      Intramembranous Aβ behaves as chaperones of other membrane proteins
      swan-de: http://purl.org/swan/2.0/discourse-elements/
      dct: http://purl.org/dc/terms/
    • Claim in a graph with authorship
      rdf:type
      <http://tinyurl.com/4h2am3a>
      swande:Claim
      dct:title
      Intramembranous Aβ behaves as chaperones of other membrane proteins
      G1
      pav:authoredBy
      <http://example.info/person/1>
      G2
      rdf:type
      foaf:name
      Vincent Marchesi
      foaf:Person
      pav: http://purl.org/pav/provenance/2.0/
      foaf: http://xmlns.com/foaf/0.1/
    • Adding provenance [1]
      rdf:type
      <http://tinyurl.com/4h2am3a>
      swande:Claim
      dct:title
      Intramembranous Aβ behaves as chaperones of other membrane proteins
      G1
      pav:curatedBy
      <http://example.info/person/0>
      G3
      rdf:type
      foaf:name
      Gwen Wong
      foaf:Person
    • Adding provenance [2]
      rdf:type
      <http://tinyurl.com/4h2am3a>
      swande:Claim
      dct:title
      Intramembranous Aβ behaves as chaperones of other membrane proteins
      G1
      pav:authoredBy
      <http://example.info/person/1>
      G2
      pav:curatedBy
      <http://example.info/person/0>
      G4
      rdf:type
      foaf:name
      Gwen Wong
      foaf:Person
    • Author’s evidence
      rdf:type
      <http://tinyurl.com/4h2am3a>
      swande:Claim
      dct:title
      Intramembranous Aβ behaves as chaperones of other membrane proteins
      G1
      swanrel:referencesAsSupportiveEvidence
      <http://example.info/citation/1>
      G5
      pav:contributedBy
      <http://example.info/person/1>
      G6
    • Adding provenance
      G1
      swanrel:referencesAsSupportiveEvidence
      <http://example.info/citation/1>
      G5
      pav:contributedBy
      <http://example.info/person/1>
      G6
      pav:curatedBy
      <http://example.info/person/0>
      G7
    • Translating the claim into HyQue-triples
      <http://example.info/alzswan:statement_f3556dcfc331d9b9af9d5c0cfc570ba6_event_1>
      Event of type GO "chaperone binding"
      rdfs:label
      rdf:type
      <http://bio2rdf.org/go:0051087>
      <prefix:actor_1>
      <http://bio2rdf.org/chebi:53002>
      rdf:type
      rdfs:label “Beta amyloid”
      <prefix:target_1>
      <http://bio2rdf.org/mesh:D008565>
      rdf:type
      rdfs:label “Membrane protein”
      <http://bio2rdf.org/go:0005886>
      <prefix:location_1>
      rdf:type
      rdfs:label “Plasma membrane”
      G8
      Triples provided by Nigam Shah
    • Adding the provenance
      Hyque triples
      G8
      pav:contributedBy
      <http://example.info/person/2>
      G9
      rdf:type
      foaf:name
      Nigam Shah
      foaf:Person
    • Connecting SWAN Claim and Hyque triples
      rdf:type
      <http://tinyurl.com/4h2am3a>
      swande:Claim
      dct:title
      Intramembranous Aβ behaves as chaperones of other membrane proteins
      G1
      swanrel:derivedFrom
      G8
      Hyque triples