SWAN, HyQue and Nanopublications

AlzSWAN, HyQueand nanopublications
An example:
Claim #1: Intramembranous Aβ behaves as chaperones of other membrane proteins
Paolo Ciccarese, PhD
February 25, 2011

A claim taken from AlzSWAN
URL: http://tinyurl.com/4h2am3a

The claim by the author in SWAN
rdf:type
<http://tinyurl.com/4h2am3a>
swande:Claim
dct:title
Intramembranous Aβ behaves as chaperones of other membrane proteins
swan-de: http://purl.org/swan/2.0/discourse-elements/
dct: http://purl.org/dc/terms/

Claim in a graph with authorship
rdf:type
swande:Claim
dct:title
G1
pav:authoredBy
<http://example.info/person/1>
G2
rdf:type
foaf:name
Vincent Marchesi
foaf:Person
pav: http://purl.org/pav/provenance/2.0/
foaf: http://xmlns.com/foaf/0.1/

Adding provenance [1]
rdf:type
swande:Claim
dct:title
G1
pav:curatedBy
G3
rdf:type
foaf:name
Gwen Wong
foaf:Person

Adding provenance [2]
rdf:type
swande:Claim
dct:title
G1
pav:authoredBy
G2
pav:curatedBy
G4
rdf:type
foaf:name
Gwen Wong
foaf:Person

Author’s evidence
rdf:type
swande:Claim
dct:title
G1
swanrel:referencesAsSupportiveEvidence
<http://example.info/citation/1>
G5
pav:contributedBy
G6

Adding provenance
G1
swanrel:referencesAsSupportiveEvidence
<http://example.info/citation/1>
G5
pav:contributedBy
G6
pav:curatedBy
G7

Translating the claim into HyQue-triples
<http://example.info/alzswan:statement_f3556dcfc331d9b9af9d5c0cfc570ba6_event_1>
Event of type GO "chaperone binding"
rdfs:label
rdf:type
<http://bio2rdf.org/go:0051087>
<prefix:actor_1>
<http://bio2rdf.org/chebi:53002>
rdf:type
rdfs:label “Beta amyloid”
<prefix:target_1>
<http://bio2rdf.org/mesh:D008565>
rdf:type
rdfs:label “Membrane protein”
<http://bio2rdf.org/go:0005886>
<prefix:location_1>
rdf:type
rdfs:label “Plasma membrane”
G8
Triples provided by Nigam Shah

Adding the provenance
Hyque triples
G8
pav:contributedBy
G9
rdf:type
foaf:name
Nigam Shah
foaf:Person

Connecting SWAN Claim and Hyque triples
rdf:type
swande:Claim
dct:title
G1
swanrel:derivedFrom
G8
Hyque triples

http://hcklab.blogspot.com	195
http://hcklab.blogspot.com.au	17
http://hcklab.blogspot.de	11
http://hcklab.blogspot.in	6
http://hcklab.blogspot.mx	3
http://twitter.com	3
http://hcklab.blogspot.ca	2
http://hcklab.blogspot.com.es	2
http://hcklab.blogspot.se	1
http://hcklab.blogspot.co.nz	1
http://services.gate.ac.uk	1
http://hcklab.blogspot.fr	1
http://hcklab.blogspot.com.br	1
http://hcklab.blogspot.it	1
http://hcklab.blogspot.com.ar	1

SWAN, HyQue and Nanopublications

by Paolo Ciccarese on Mar 11, 2011

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SWAN, HyQue and Nanopublications — Presentation Transcript