3. Mac OS X
OS/CUI GUI/ /
/ / /
pwd/mkdir/cd/ls/less/rm/rmdir
4. OS
OS(OperaIng System)
Windows Mac OS
*Mac OS X UNIX
CUI GUI
OS
UNIX Linux (
) CUI (Character User Interface)
Windows Mac
GUI (Graphical User Interface)
CUI
GUI
5.
Mac OS
$ ( )
(Perl, Ruby,
Java )
/
( echo $PATH )
6.
7. (UNIX )
Mac Users
bin
dev
etc
root
sbin
usr
home
var
tg01
tg02
tg03
bin
dev
etc
root
sbin
usr
home (Users)
var
8. (PATH)
/
bin
Users
usr
var
/bin
/Users
/usr
/var
tg01
tg02
/Users/tg01
/Users/tg02
sample1.txt /Users/tg01/sample1.txt
15. 1)
2) bin [/Users/tg01]
3)
4) bin
5)
bin
tab
aabbccdd bbccddee
ls aa[tab] ls aabbccdd aa
page , page
Web
hip://www.k‐tanaka.net/unix/
hip://www5.plala.or.jp/vaio0630/kp/command.htm
22. NCBI Viewer keyword
1991 Buck and Axel
1082 1082
query [olfactory receptor] 31395 hit
["olfactory receptor gene" AND rat AND Olr1082]
""
AND
GenBank
24. NCBI Viewer
i) Accession number
Search NucleoIde for Accession number
ii) [Links] [PubMed]
iii) [All links from this record]
[NucleoIde]
[Cited in PMC]
57. (6):
Coding Sequence 2
(synonymous subsItuIon)
(nonsynonymous subsItuIon)
dS, Ks (the rate of synonymous subsItuIons)
dN, Ka (the rate of nonsynonymous subsItuIons)
2nd base
1st base
3rd base
AUG
U
C
A
G
UUU
Phe
UCU
Ser
UAU
Tyr
UGU
Cys
U
UAA, UAG, UGA
UUC
Phe
UCC
Ser
UAC
Tyr
UGC
Cys
C
U
UUA
Leu
UCA
Ser
UAA
stop
UGA
stop
A
1st
UUG
Leu
UCG
Ser
UAG
stop
UGG
Trp
G
CUU
Leu
CCU
Pro
CAU
His
CGU
Arg
U
(Leu, Arg)
CUC
Leu
CCC
Pro CAC
His
CGC
Arg
C
C
CUA
Leu
CCA
Pro
CAA
Gln
CGA
Arg
A
CUG
Leu
CCG
Pro CAG
Gln
CGG
Arg
G
2nd
AUU
Ile
ACU
Thr
AAU
Asn
AGU
Ser
U
AUC
Ile
ACC
Thr
AAC
Asn
AGC
Ser
C
A
AUA
Ile
ACA
Thr
AAA
Lys
AGA
Arg
A
AUG
Met
ACG
Thr
AAG
Lys
AGG
Arg
G
GUU
Val
GCU
Ala
GAU
Asp
GGU
Gly
U
GUC
Val
GCC
Ala
GAC
Asp
GGC
Gly
C
G
GUA
Val
GCA
Ala
GAA
Glu
GGA
Gly
A
GUG
Val
GCG
Ala
GAG
Glu
GGG
Gly
G
60. –Protein families‐
Family ID: ID
Olr1082 57
Consensus annotaHon:
Other Rat transcripts in this family:
MulHple alignments: alignment
61. –VariaIon Table (1)‐
Ambiguity
Code
Represents
Y
Pyrimidine (C&T)
R
Purine (A&G)
ID: SNP ID ( SNP 100bp ) W
weak (A&T)
Type: SNP ( / UTR ) S
strong (G&C)
Chr: bp: (bp) K
keto (T&G)
Alleles: M
amino (C&A)
Ambiguity: variaIon D
not C
AA change: V
not T
AA co‐ordinate: ( ) H
not G
Class: inserIon B
not A
Source: variaIon X/N
unknown
ValidaHon: variaIon (frequency hapmap )
66. Transcript summary
Ensembl ID ( ) (Ra#us norvegicus )
ENSG… Gene ENSRNOG… Rat Gene
ENST… Transcript ENSRNOT… Rat Transcript
ENSE… Exon ENSRNOE… Rat Exon
ENSP… Protein
ENSRNOP… Rat Protein
72. –Gene ontology‐
Gene ontology
Evidence
IC ‐ Inferred by Curator
IDA‐ Inferred from Direct Assay
IEA ‐ Inferred from Electronic AnnotaIon
IEP ‐ Inferred from Expression Paiern
IGI ‐ Inferred from GeneIc InteracIon
IMP ‐ Inferred from Mutant Phenotype
IPI ‐ Inferred from Physical InteracIon
ISS ‐ Inferred from Sequence or Structural Similarity
NAS ‐ Non‐traceable Author Statement
ND ‐ No biological Data available
RCA ‐ inferred from Reviewed ComputaIonal
Analysis
TAS ‐ Traceable Author Statement
Gene Ontology NR ‐ Not Recorded
73. (8): Gene Ontology
Gene Ontology (GO)
GO GO Term Go Term 3
biological process
cellular component
molecular funcIon
olfactory receptor gene
molecular_funcIon [GO:0003674]
molecular transducer acIvity [GO:0060089]
signal transducer acIvity [GO:0004871]
receptor acIvity [GO:0004872]
transmembrane receptor acIvity [GO:0004888]
G‐protein coupled receptor acIvity [GO0004930]
rhodopsin‐like receptor acIvity [GO:0001584]