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Third-Party PubMed Tools

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Resources discussed in the CE Course: Third-Party PubMed Tools. Last updated 3/24/11.

Resources discussed in the CE Course: Third-Party PubMed Tools. Last updated 3/24/11.

Published in: Health & Medicine, Technology
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  • 1. Third-Party PubMed Tools<br />Resources<br />What’s new with PubMed<br />PubMed New and Noteworthy<br />http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=PubMedNews<br />Brief announcements highlighting recent enhancements and changes to the PubMed, Journals, and MeSH databases. Available as RSS.<br />NLM Technical Bulletin<br />http://www.nlm.nih.gov/pubs/techbull/tb.html<br />More detailed articles explaining changes to PubMed and other NLM databases. Subscribe via RSS or email.<br />PUBMED-ALERTS<br />https://list.nih.gov/archives/pubmed-alerts.html<br />Sign up to receive e-mail announcements of major PubMed system problems.<br />APIs and how they work<br />EUtils<br />http://eutils.ncbi.nlm.nih.gov/<br />Information about and access to all of NCBI’s Entrez Programming Utilities.<br />EntrezAJAXhttp://entrezajax.appspot.com/<br />A third-party derivative of NCBI’s EUtils designed for launching searches directly from the browser (improves speed).<br />Building Customized Data Pipelines Using the Entrez Programming Utilitieshttp://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=coursework&part=eutils<br />A short course on how to use EUtils. <br />How Stuff Works: How APIs Workhttp://tinyurl.com/27rw2kn<br />A slightly more plain-language explanation of APIs, using conferencing software as an example.<br />Third-party PubMed tools discussed in this class<br />Ali Baba: http://alibaba.informatik.hu-berlin.de/ eTBLAST: http://etest.vbi.vt.edu/etblast3/GoPubMed: http://gopubmed.com/HubMed: http://www.hubmed.org/LigerCat: http://ligercat.ubio.org/ MEDSUM: http://webtools.mf.uni-lj.si/public/medsum.htmlNovoseek: http://www.novoseek.com/PubGet: http://pubget.com/PMinstant: http://pminstant.com/PubAnatomy: http://brainarray.mbni.med.umich.edu/Brainarray/prototype/PubAnatomy/PubMed On Tap (for iPhone): http://www.referencesontap.com/PubMedReMiner: http://bioinfo.amc.uva.nl/human-genetics/pubreminer/Quertle: http://www.quertle.info/v2/SLIM: http://pmi.nlm.nih.gov/slim/<br />Even more tools<br />David Rothman: 3rd Party PubMed categoryhttp://davidrothman.net/category/technology/3rd-party-pubmedmedline-tools/<br />David Rothman manages a hospital library in New York and maintains a popular blog about health information topics.<br />PubMed Alternativeshttp://guides.library.vcu.edu/content.php?pid=111410&sid=839049<br />A LibGuide by Margaret Henderson, Virginia Commonwealth University Tompkins-McCaw Library<br />Additional Reading<br />Why Use a Third-Party Tool to Interact with PubMed?http://nnlm.gov/pnr/dragonfly/2010/03/16/hubmed_quertle/<br />By Kristine Ogden, guest post for Dragonfly. Describes HubMed and Quertle.<br />PubMed Search Interface Alternatives: A Descriptive Comparisonin Journal of Electronic Resources in Medical Libraries, 7:126-134, 2010<br />By Elizabeth Connor, The Citadel. Describes ClusterMed, HubMed, eTBlast, and SLIM.<br />This handout was prepared for the MLA CE Course Third-Party PubMed Tools and was last updated on October 6, 2010. It is available electronically: http://www.slideshare.net/nnlmpnr<br />

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