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Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
Molecular Visualization
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Molecular Visualization

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3a charla de Andres en el curso del i-2012

3a charla de Andres en el curso del i-2012

Published in: Education, Technology, Design
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  • 1. Visualización de moleculas
  • 2. Experiencia previa en el temahttp://interfaze.info/category/science
  • 3. WEHI.TV http://wehi.edu.au/education/wehitv/http://www.youtube.com/watch?feature=player_embedded&v=OjPcT1uUZiE
  • 4. Estructuras moleculares pueden ser representadas de distintas maneras Esferas de Van der Waals (http://qutemol.sourceforge.net/)
  • 5. Cintas o “ribbons” (http://www.ks.uiuc.edu/Research/vmd/)
  • 6. Superficies moleculares (http://www.cgl.ucsf.edu/chimera/)
  • 7. http://www.cgl.ucsf.edu/chimera/ImageGallery/
  • 8. Muchas veces estas distintas representaciones de usan de manera combinada:
  • 9. Base de datos de estructuras de biomoléculas: PDB http://www.pdb.org/pdb/home/home.do
  • 10. Construcción de ribbons(from http://www.cbse.uab.edu/carson/papers/wavelets/wave_met.html)
  • 11. “Algorithm for ribbon models of proteins”, Mike Carson and Charles E. Bugg, J.Mol.Graphics4, pp. 121-122 (1986) http://www.cbse.uab.edu/carson/papers/ribbons86/ribbons86.html
  • 12. Construcción de superficies moleculares(from http://www.ccl.net/cca/documents/molecular-modeling/node5.html)
  • 13. "Fast and Robust Computation of Molecular Surfaces", Michel F. Sanner, Arthur J.Olson, Jean-Claude Spehner. 11th Symposium on Computational Geometry, VancouverBC Canada, 1996 http://mgl.scripps.edu/people/sanner/html/msms_home.html
  • 14. Superficies moleculares en Jmol: http://jmol.sourceforge.net/docs/surface/Superficies moleculares en Chimera:http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/representation.html#surfaces
  • 15. Superficies moleculares en VMD (QuickSurf):http://www.ks.uiuc.edu/Research/vmd/current/ug/node72.html
  • 16. EDTSurf Algoritmo de triangulación de superficies moleculares, creado por Dong Xu y Yang ZhangArtículo en PloS: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0008140Página web (incluye código fuente y ejecutables): http://zhanglab.ccmb.med.umich.edu/EDTSurf/

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