Your SlideShare is downloading. ×
0
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
What can Bioinformaticians learn from YouTube?
Upcoming SlideShare
Loading in...5
×

Thanks for flagging this SlideShare!

Oops! An error has occurred.

×
Saving this for later? Get the SlideShare app to save on your phone or tablet. Read anywhere, anytime – even offline.
Text the download link to your phone
Standard text messaging rates apply

What can Bioinformaticians learn from YouTube?

2,746

Published on

A critical look at what those involved in providing bioinformatics tools and data can learn from YouTube.

A critical look at what those involved in providing bioinformatics tools and data can learn from YouTube.

Published in: Technology, Design
1 Comment
6 Likes
Statistics
Notes
No Downloads
Views
Total Views
2,746
On Slideshare
0
From Embeds
0
Number of Embeds
0
Actions
Shares
0
Downloads
60
Comments
1
Likes
6
Embeds 0
No embeds

Report content
Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
No notes for slide

Transcript

  • 1. What can Bioinformaticians learn from YouTube?
  • 2. Data
  • 3. New project. New schema.
  • 4. EMBL: 20 different data formats
  • 5. “A biologist would rather share their toothbrush than their (gene) names” Mike Ashburner
  • 6. YouTube loves to share
  • 7. 100 million views per day
  • 8. 114 apps
  • 9. <rdf:RDF xmlns=quot;http://www.affymetrix.com/community/ publications/affymetrix/tmsplice#quot;
  • 10. <Gene rdf:about=quot;#1110002A21Rikquot;> <chr>chr1</chr> <hasVariant rdf:parseType=quot;Resourcequot;> <representedBy rdf:resource=quot;#gi13385627quot;/> </hasVariant> <hasVariant rdf:parseType=quot;Resourcequot;> <representedBy rdf:resource=quot;#gi18043402quot;/> </hasVariant> <strand>+</strand> </Gene>
  • 11. RDF, OWL, SPARQL, GRDDL, WTF?
  • 12. Lower case ‘s’, lower case ‘w’ The semantic web, not The Semantic Web
  • 13. <tr> <th class=quot;two-columnquot;>Gene</th> <td class=quot;two-columnquot;><table width=quot;100%quot; cellpadding=quot;4quot;> <tr> <td><strong> <a href=quot;http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/ get_data.pl?hgnc_id=1101quot;>BRCA2</a></div></strong> (HGNC Symbol) </td> <td> <span class=quot;smallquot;> To view all Ensembl genes linked to the name <a href=quot;/Homo_sapiens/featureview?type=Gene;id=BRCA2quot;>click here</a>.</span> </td> </tr> </table><p> This gene is a member of the Human CCDS set: <a href=quot;http:// www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi? REQUEST=CCDS&amp;DATA=CCDS9344quot;>CCDS9344</a> </p> </td> </tr>
  • 14. <tr class=quot;hgenequot;> <th class=quot;two-columnquot;>Gene</th> <td class=quot;two-columnquot;><table width=quot;100%quot; cellpadding=quot;4quot;> <tr> <td><strong> <a href=quot;http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/ get_data.pl?hgnc_id=1101quot; rel=quot;hgnc_namequot;>BRCA2</a></div></strong> (HGNC Symbol) </td> <td> <span class=quot;smallquot;> To view all Ensembl genes linked to the name <a href=quot;/Homo_sapiens/featureview?type=Gene;id=BRCA2quot; rel=quot;gene_listquot; >click here</a>.</span> </td> </tr> </table><p> This gene is a member of the Human CCDS set: <a href=quot;http:// www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi? REQUEST=CCDS&amp;DATA=CCDS9344quot; rel=quot;ccdsquot;>CCDS9344</a> </p> </td> </tr>
  • 15. Can our web site be our API?
  • 16. http://www.ensembl.org/Homo_sapiens/geneview?gene=ENSG00000139618
  • 17. http://www.ensembl.org/Homo_sapiens/geneview?gene=ENSG00000139618 my $gene_adaptor = $registry->get_adaptor( 'Human', 'Core', 'Gene' ); my $gene = fetch_by_gene_stable_id( 'ENSG00000139618' );
  • 18. More data on our sites than through the API (we’re not the only ones)
  • 19. RSS
  • 20. iCal
  • 21. XML
  • 22. ational state Represent transfer RESTful service
  • 23. psd-production/projects
  • 24. GET psd-production/projects RETRIEVE
  • 25. <projects>

×