01/12/10 MSI/CIMR -MIBBI Workshop 2010 1
Metabolomics: MSI CIMR
Checklists in Metabolomics 3 (2007)
1. Samples
In vivo / m...
01/12/10 MSI/CIMR -MIBBI Workshop 2010 2
Level of implementation
● Metabolomics requires reviewers to use
checklists
● Sof...
01/12/10 MSI/CIMR -MIBBI Workshop 2010 3
Status, contributors, funding
● Many contributors to the checklists
● Quiet after...
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Nigel hardy cimr

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Nigel hardy cimr

  1. 1. 01/12/10 MSI/CIMR -MIBBI Workshop 2010 1 Metabolomics: MSI CIMR Checklists in Metabolomics 3 (2007) 1. Samples In vivo / mammalian biology microbial and in vitro biology plant biology environmental 2. Chemical analysis Sample prep, Chromatography, MS, NMR, FT-IR, QA and method validation, data preprocessing, metabolite ID, stable isotopes and flux analysis 3. Data analysis Data reduction/deconvolution, Pre-processing, Algorithm selection, (Univariate analysis,) Unsupervised methods, Supervised learning, Model generality, Model validation
  2. 2. 01/12/10 MSI/CIMR -MIBBI Workshop 2010 2 Level of implementation ● Metabolomics requires reviewers to use checklists ● Software ● Working towards a FuGE extension ● Plant Biology – Growth, Harvest, Storage ● NMR, GC-MS, LC-MS (from PSI) ● Data analysis ??? ● EU Framework VI project "META-PHOR": Food-ST- 2006-03622 (ended)
  3. 3. 01/12/10 MSI/CIMR -MIBBI Workshop 2010 3 Status, contributors, funding ● Many contributors to the checklists ● Quiet after checklist ● Activity under META-PHOR ● Collaboration with PSI ● Continuing at Aber

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