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Metabolomics: MSI CIMRChecklists in Metabolomics 3 (2007) 3. Data analysis1. Samples Data reduction/deconvolution, Pre-processing, In vivo / mammalian biology Algorithm selection, microbial and in vitro biology (Univariate analysis,) Unsupervised methods, plant biology Supervised learning, Model generality, environmental Model validation2. Chemical analysisSample prep,Chromatography, MS, NMR, FT-IR,QA and method validation,data preprocessing, metabolite ID,stable isotopes and flux analysis01/12/10 MSI/CIMR -MIBBI Workshop 2010 1
Level of implementation● Metabolomics requires reviewers to use checklists● Software ● Working towards a FuGE extension ● Plant Biology – Growth, Harvest, Storage ● NMR, GC-MS, LC-MS (from PSI) ● Data analysis ● EU Framework VI project "META-PHOR": Food-ST- 2006-03622 (ended)01/12/10 MSI/CIMR -MIBBI Workshop 2010 2
Status, contributors, funding ● Many contributors to the checklistsQuite after checklist ● Activity under META-PHOR ● Collaboration with PSI ● Continuing at Aber01/12/10 MSI/CIMR -MIBBI Workshop 2010 3