Objectives of larger phylogenetic
study and component trees
Character
states
Character Matrix
Phylogeny
Procedures for
est...
• Initial publication: Leebens-Mack et al. 2006. Taking the First Steps
towards a Standard for Reporting on Phylogenies: M...
Brent D. Mishler
Christian Zmasek
Claude Depamphilis
Clifford W. Cunningham
Dennis W. Stevenson
Douglas E. Soltis
Elizabet...
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MIAPA

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MIAPA

  1. 1. Objectives of larger phylogenetic study and component trees Character states Character Matrix Phylogeny Procedures for establishing homologies Phylogenetic methods and analysis parameters External resources Publication (e.g. PubMed) Character database (e.g. GenBank, morphbank, MorphBank) MIAPA Taxonomic database Specimen Information Voucher Information MIAPA: Minimum Information about a Phylogenetic Analysis
  2. 2. • Initial publication: Leebens-Mack et al. 2006. Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA). OMICS, 10(2): 231-237. • TreeBASE and DRYAD: Prototype and de facto minimum standards • PhyloWS: An emerging API specification for web-services; programmable and predictable interface to on-line phylogenetic database. • Exchange formats and computable semantics: – NEXUS: Legacy exchange format – NeXML: Phylogenetic character data and trees expressed in XML – CDAO: Ontology for evolutionary biology – JSON? • Phyloinformatics in TDWG (Taxonomic Database Working Group) Status
  3. 3. Brent D. Mishler Christian Zmasek Claude Depamphilis Clifford W. Cunningham Dennis W. Stevenson Douglas E. Soltis Elizabeth A. Kellogg Eric Brenner Eugene V. Koonin Herveé Philippe J. Chris Pires Jeff J. Doyle Jim Leebens-Mack John E. Bowers John Harshman Jonathan A. Eisen Kerr Wall Kimmen Sjölander Mark J. Clement Pamela S. Soltis Rob DeSalle Robert K. Jansen Seung Y. Rhee Steven Cannon Tandy Warnow Todd Vision Xun Gu Yin-Long Qiu Community Support (Initial Publication) Karen Cranston Michael Donoghue Rob Guralnick David Maddison William Piel Val Tannen Rutger Vos Mark Westneat PRF, Inc (TreeBASE) NESCent CDAO NeXML DRYAD pPOD TDWG Interested Parties Organizations
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