ARCHIV: MOLIM Journal Club (ab Mai 2007)
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ARCHIV: MOLIM Journal Club (ab Mai 2007) Document Transcript

  • 1. Journal Club – MOLIM Time: Thursday May 10, 2007, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Susanne Dunker Kadota S, Kanayama T, Miyajima N, Takeuchi K, Nagata K. Enhancing of measles virus infection by magnetofection. J Virol Methods. 2005 Sep;128(1-2):61-6 http://www.sciencedirect.com/science/article/B6T96-4G65TXT-1/2/3683e9202f4e0882b26ace5720 6308a3 Rebecca Winkelmann Dhaka A, Murray AN, Mathur J, Earley TJ, Petrus MJ, Patapoutian A. TRPM8 Is Required for Cold Sensation in Mice. Neuron. 2007 May 3;54(3):371-8. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17481391&query_hl=3&itool=pubmed _docsum <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17481391&query_hl=3&itool=pubmed _docsum> Sandra Schreiber Zhou B, Wang S, Mayr C, Bartel DP, Lodish HF. miR-150, a microRNA expressed in mature B and T cells, blocks early B cell development when expressed prematurely. Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7080-5 http://www.pnas.org/cgi/content/full/104/17/7080 Kai Herrmann Pear WS, Nolan GP, Scott ML, Baltimore D. Production of high-titer helper-free retroviruses by transient transfection. Proc Natl Acad Sci U S A. 1993 Sep 15;90(18):8392-6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7690960 <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7690960> Qin Liu Higashitsuji H, Higashitsuji H, Masuda T, Liu Y, Itoh K, Fujita J. Enhanced Deacetylation of p53 by the Anti-apoptotic Protein HSCO in Association with Histone Deacetylase 1. J Biol Chem. 2007 May 4;282(18):13716-25. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17353187&query_hl=7&itool=pubmed _docsum <http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=17353187&query_hl=7&itool=pubmed _docsum>
  • 2. Journal Club – MOLIM Time: Thursday June 21, 2007, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Susanne Ackermann Ailin Bai, Hui Hu, Mandy Yeung and Jianzhu Chen. Krüppel-Like Factor 2 Controls T Cell Trafficking by Activating L-Selectin (CD62L) and Sphingosine-1-Phosphate Receptor 1 Transcription The Journal of Immunology, 2007, 178: 7632-7639 http://jimmunol.org/cgi/reprint/178/12/7632 Martina Porstner Thai TH, Calado DP, Casola S, Ansel KM, Xiao C, Xue Y, Murphy A, Frendewey D, Valenzuela D, Kutok JL, Schmidt-Supprian M, Rajewsky N, Yancopoulos G, Rao A, Rajewsky K. Regulation of the germinal center response by microRNA-155. Science. 2007 Apr 27;316(5824):604-8. http://www.sciencemag.org/cgi/content/full/316/5824/604 Andreas Brandl Roger Sciammas, A.L. Shaffer, Jonathan H. Schatz, Hong Zhao, Louis M. Staudt and Harinder Singh. Graded Expression of Interferon Regulatory Factor-4 Coordinates Isotype Switching with Plasma Cell Differentiation. Immunity 25, 225–236, August 2006 http://www.sciencedirect.com/science? _ob=ArticleURL&_udi=B6WSP-4KNKVDK-2&_user=616145&_coverDate=08%2F31%2F2006 &_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000032322&_version=1&_urlVersio n=0&_userid=616145&md5=8a92110681ae58aa44d78c74233be8fd# Carmen Kroczek Blagoy Blagoev, Shao-En Ong, Irina Kratchmarova, Matthias Mann. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nature Biotechnology 22, 1139 - 1145 (2004) http://www.nature.com/nbt/journal/v22/n9/abs/nbt1005.html;jsessionid=7A54FE704AE029A165C B4B7B5D6E4EC5 Sebastian Dütting Tominaga M, Kurihara H, Honda S, Amakawa G, Sakai T, Tomooka Y. Molecular characterization of mitocalcin, a novel mitochondrial Ca2+-binding protein with EF-hand and coiled-coil domains. J Neurochem. 2006 Jan;96(1):292-304. http://www.ncbi.nlm.nih.gov/sites/entrez? cmd=Retrieve&db=PubMed&list_uids=16336229&dopt=Abstract
  • 3. Journal Club – MOLIM Time: Thursday July 18, 2007, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Susanne Dunker Lee JS, Yu Q, Shin JT, Sebzda E, Bertozzi C, Chen M, Mericko P, Stadtfeld M, Zhou D, Cheng L, Graf T, MacRae CA, Lepore JJ, Lo CW, Kahn ML. Klf2 is an essential regulator of vascular hemodynamic forces in vivo. Dev Cell. 2006 Dec;11(6):845-57. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WW3-4MGW3GF- F&_user=616145&_coverDate=12%2F31%2F2006&_rdoc=1&_fmt=&_orig=search&_sort=d&vie w=c&_acct=C000032322&_version=1&_urlVersion=0&_userid=616145&md5=dd660d071c688b3 22c2175e37e6f04c9 Sebastian Brachs Wernig M, Meissner A, Foreman R, Brambrink T, Ku M, Hochedlinger K, Bernstein BE, Jaenisch R. In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state. Nature. 2007 Jun 6. http://www.nature.com/nature/journal/vaop/ncurrent/abs/nature05944.html;jsessionid=7316D4FE6 DE0ABFBA9574B01B0148949 Sandra Schreiber Lytle JR, Yario TA, Steitz JA. Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5' UTR as in the 3' UTR. Proc Natl Acad Sci U S A. 2007 Jun 5;104(23):9667-72. http://www.pnas.org/cgi/content/full/104/23/9667 Kai Herrmann Prakriya, M., S. Feske, Y. Gwack, S. Srikanth, A. Rao, and P. G. Hogan. (2006). Orai1 is an essential pore subunit of the CRAC channel. Nature 443:230-233. http://www.ncbi.nlm.nih.gov/sites/entrez? cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16921383
  • 4. Journal Club – MOLIM Time: Thursday September 27, 2007, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Susanne Ackermann Ailin Bai, Hui Hu, Mandy Yeung and Jianzhu Chen. Up-regulation of the T cell quiescence factor KLF2 in a leukaemic T-cell line after expression of the inositol 5'-phosphatase SHIP-1 British Journal of Haematology, 2005, Dec;131(5):628-31 http://www.ncbi.nlm.nih.gov/sites/entrez? Db=pubmed&Cmd=ShowDetailView&TermToSearch=16351639&ordinalpos=2&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Andreas Brandl Muto T, Okazaki IM, Yamada S, Tanaka Y, Kinoshita K, Muramatsu M, Nagaoka H, Honjo T. Negative regulation of activation-induced cytidine deaminase in B cells Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2752-7 http://www.pnas.org/cgi/content/full/103/8/2752 Carmen Kroczek Park JG, Oie HK, Sugarbaker PH, Henslee JG, Chen TR, Johnson BE, Gazdar A. Characteristics of cell lines established from human colorectal carcinoma. Cancer Res. 1987 Dec 15;47(24 Pt 1):6710-8 http://www.ncbi.nlm.nih.gov/sites/entrez? Db=pubmed&Cmd=ShowDetailView&TermToSearch=3479249&ordinalpos=10&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Sebastian Dütting Flemming A, Brummer T, Reth M, Jumaa H. The adaptor protein SLP-65 acts as a tumor suppressor that limits pre-B cell expansion. Nature Immunology. 2003 Jan;4(1):38-43. http://www.ncbi.nlm.nih.gov/sites/entrez? cmd=Retrieve&db=PubMed&list_uids=16336229&dopt=Abstract
  • 5. Journal Club – MOLIM Time: Thursday Oct 25, 2007, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Martina Porstner Löffler D, Brocke-Heidrich K, Pfeifer G, Stocsits C, Hackermüller J, Kretzschmar AK, Burger R, Gramatzki M, Blumert C, Bauer K, Cvijic H, Ullmann AK, Stadler PF, Horn F. Interleukin-6– dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer. Blood, 2007 Aug 15;110(4):1330-3. http://bloodjournal.hematologylibrary.org/cgi/reprint/110/4/1330 Sebastian Brachs Deborah J. Kasprowicz, P. Scott Smallwood, Aaron J. Tyznik and Steven F. Ziegler. Scurfin (FoxP3) Controls T-Dependent Immune Responses In Vivo Through Regulation of CD4^+ T Cell Effector Function. Journal of Immunology, 2003, 171: 1216-1223. http://www.jimmunol.org/cgi/content/full/171/3/1216 Sandra Schreiber Johnson K, Pflugh DL, Yu D, Hesslein DG, Lin KI, Bothwell AL, Thomas-Tikhonenko A, Schatz DG, Calame K. B cell-specific loss of histone 3 lysine 9 methylation in the V(H) locus depends on Pax5. Nature Immunology. 2004 Aug;5(8):853-61. http://www.nature.com/ni/journal/v5/n8/abs/ni1099.html;jsessionid=68DAF2CB81248ADC272BA D0C56BB88B2 Rebecca Winkelmann Fokko van Loo P, Dingjan GM, Maas A, Hendriks RW. Surrogate-light-chain silencing is not critical for the limitation of pre-B cell expansion but is for the termination of constitutive signaling. Immunity. 2007 Sep;27(3):468-80. http://www.ncbi.nlm.nih.gov/sites/entrez? Db=pubmed&Cmd=ShowDetailView&TermToSearch=17869135&ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum
  • 6. Journal Club – MOLIM Time: Thursday November 22, 2007, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Andreas Brandl Shizuka Masakia, Rie Ohtsukab, Yasunobu Abeb, Koichiro Mutab and Tsukuru Umemura. Expression patterns of microRNAs 155 and 451 during normal human erythropoiesis. Biochem Biophys Res Commun. 2007 Dec 21;364(3):509-14 http://www.sciencedirect.com/science? _ob=ArticleURL&_udi=B6WBK-4PYPRM0-1&_user=616145&_coverDate=12%2F21%2F2007& _rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000032322&_version=1&_urlVersion =0&_userid=616145&md5=bc00548d67e9358e0fe3b1f96470d12d Carmen Kroczek Brauweiler A., Merrell K., Gauld SB, Cambier JC. Cutting Edge: Acute and chronic exposure of immature B cells to antigen leads to impaired homing and SHIP1-dependent reduction in stromal cell-derived factor-1 responsiveness. J Immunol. 2007 Mar 15;178(6):3353-7. http://www.jimmunol.org/cgi/content/full/178/6/3353 Sebastian Dütting Denise A. Martin, Liwei Lu, Marilia Cascalho, and Gillian E. Wu2.Maintenance of Surrogate Light Chain Expression Induces Developmental Delay in Early B Cell Compartment. The Journal of Immunology, 2007, 179: 4996–5005 http://www.jimmunol.org/cgi/content/full/179/8/4996 Anke Lang L. Karimi, D. H. Crawford, S. Speck and L. J. Nicholson. Identification of an epithelial cell differentiation responsive region within the BZLF1 promoter of the Epstein-Barr virus Journal of General Virology (1995), 76, 759-765. http://vir.sgmjournals.org/cgi/reprint/76/4/759
  • 7. Journal Club – MOLIM Time: Thursday Jan 31, 2008, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Anke Lang Bhende PM, Dickerson SJ, Sun X, Feng WH, Kenney SC. X-box-binding protein 1 activates lytic Epstein-Barr virus gene expression in combination with protein kinase D. J Virol. 2007 Jul;81(14):7363-70 http://www.ncbi.nlm.nih.gov/pubmed/17494074? ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum <javascript:AL_get(this, 'jour', 'J Virol.');> Sun CC, Thorley-Lawson DA. Plasma cell-specific transcription factor XBP-1s binds to and transactivates the Epstein-Barr virus BZLF1 promoter. J Virol. 2007 Dec;81(24):13566-77. http://www.ncbi.nlm.nih.gov/pubmed/17898050? ordinalpos=3&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Sebastian Brachs Miazek A, Cebula A, Skwarek M, Cebrat M, Kisielow P. Restrictase free generation of target vectors for disruption of complex mouse genes. BBRC 358 (2007) 483-488 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WBK-4NM6DMF- B&_user=616145&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000032322&_versi on=1&_urlVersion=0&_userid=616145&md5=11842547b41c7e68aaaaaf48d7319f8b Sandra Schreiber Caifu Chen, Dana A. Ridzon, Adam J. Broomer, Zhaohui Zhou, Danny H. Lee, Julie T. Nguyen, Maura Barbisin, Nan Lan Xu, Vikram R. Mahuvakar, Mark R. Andersen, Kai Qin Lao, Kenneth J. Livak and Karl J. Guegler. Real-time quantification of microRNAs by stem–loop RT–PCR. Nucleic Acids Res. 2005 Nov 27;33(20):e179. http://nar.oxfordjournals.org/cgi/content/full/33/20/e179 Rebecca Winkelmann Magin-Lachmann C, Kotzamanis G, D'Aiuto L, Cooke H, Huxley C, Wagner E. In vitro and in vivo delivery of intact BAC DNA -- comparison of different methods. J Gene Med. 2004 Feb;6(2):195-209. http://www.ncbi.nlm.nih.gov/pubmed/14978773? ordinalpos=17&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum
  • 8. Journal Club – MOLIM Time: Thursday Apr 03, 2008, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Anke Lang Boccellato F, Anastasiadou E, Rosato P, Kempkes B, Frati L, Faggioni A, Trivedi P. EBNA2 interferes with the germinal center phenotype by downregulating BCL6 and TCL1 in non- Hodgkin's lymphoma cells. J Virol. 2007 Mar;81(5):2274-82 http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17376804 Sebastian Brachs Seibler J, Kleinridders A, Küter-Luks B, Niehaves S, Brüning JC, Schwenk F. Reversible gene knockdown in mice using a tight, inducible shRNA expression system. Nucleic Acids Res. 2007;35(7):e54. http://www.pubmedcentral.nih.gov/articlerender.fcgi? tool=pubmed&pubmedid=17376804 Sandra Schreiber Koralov SB, Muljo SA, Galler GR, Krek A, Chakraborty T, Kanellopoulou C, Jensen K, Cobb BS, Merkenschlager M, Rajewsky N, Rajewsky K. Dicer ablation affects antibody diversity and cell survival in the B lymphocyte lineage. Cell. 2008 Mar 7;132(5):860-74. http://www.cell.com/content/article/abstract?uid=PIIS0092867408002687 Rebecca Winkelmann Sebzda E, Zou Z, Lee JS, Wang T, Kahn ML. Transcription factor KLF2 regulates the migration of naive T cells by restricting chemokine receptor expression patterns. Nat Immunol. 2008 Mar;9(3):292-300. http://www.nature.com/ni/journal/v9/n3/abs/ni1565.html;jsessionid=DFAFE326A7082B77F66EA7 8B940A2A91
  • 9. Journal Club – MOLIM Time: Thursday Apr 17, 2008, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Martina Porstner Fan-Ru Lin, Hui-Kai Kuo, Hsia-Yuan Ying, Fu-Hung Yang, and Kuo-I Lin. Induction of Apoptosis in Plasma Cells by B Lymphocyte–Induced Maturation Protein-1 Knockdown. Cancer Res. 2007 Dec 15;67(24):11914-23 http://cancerres.aacrjournals.org/cgi/content/full/67/24/11914 Sebastian Dütting Cope GA, Deshaies RJ. Targeted silencing of Jab1/Csn5 in human cells downregulates SCF activity through reduction
  • 10. Journal Club – MOLIM Time: Thursday Apr 17, 2008, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Martina Porstner Fan-Ru Lin, Hui-Kai Kuo, Hsia-Yuan Ying, Fu-Hung Yang, and Kuo-I Lin. Induction of Apoptosis in Plasma Cells by B Lymphocyte–Induced Maturation Protein-1 Knockdown. Cancer Res. 2007 Dec 15;67(24):11914-23 http://cancerres.aacrjournals.org/cgi/content/full/67/24/11914 Sebastian Dütting Cope GA, Deshaies RJ. Targeted silencing of Jab1/Csn5 in human cells downregulates SCF activity through reduction of F-box protein levels. BMC Biochem. 2006 Jan 9;7:1. http://www.biomedcentral.com/1471-2091/7/1 Andreas Brandl Ventura A, Young AG, Winslow MM, Lintault L, Meissner A, Erkeland SJ, Newman J, Bronson RT, Crowley D, Stone JR, Jaenisch R, Sharp PA, Jacks T. Targeted deletion reveals essential and overlapping functions of the miR-17 through 92 family of miRNA clusters. Cell. 2008 Mar 7;132(5):875-86. http://www.cell.com/content/article/abstract?uid=PIIS0092867408002675 Carmen Crozcek Ishiguro K, Ando T, Goto H, Xavier R. Bcl10 is phosphorylated on Ser138 by Ca2+/calmodulin- dependent protein kinase II. Mol Immunol. 2007 Mar;44(8):2095-100. http://www.ncbi.nlm.nih.gov/sites/entrez? Db=pubmed&Cmd=ShowDetailView&TermToSearch=17869135&ordinalpos=1&itool=EntrezSyst em2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum
  • 11. Journal Club – MOLIM Time: Wednesday May 07, 2008, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Anke Lang Erna Magnúsdóttir, Sergey Kalachikov, Koji Mizukoshi, David Savitsky, Akemi Ishida-Yamamoto, Andrey A. Panteleyev, and Kathryn Calame. Epidermal terminal differentiation depends on B lymphocyte-induced maturation protein-1. Proc Natl Acad Sci U S A. 2007 September 18; 104(38): 14988–14993. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17846422 Sebastian Brachs Xuemei Zhong, Wenda Gao, Nicolas Degauque, Chunyan Bai, Yan Lu, James Kenny, Mohamed Oukka, Terry B. Strom and Thomas L. Rothstein. Reciprocal generation of Th1/Th17 and T(reg) cells by B1 and B2 B cells. http://www3.interscience.wiley.com/journal/114801697/abstract?CRETRY=1&SRETRY=0 Sandra Schreiber Kathryn A. O’Donnell, Erik A. Wentzel, Karen I. Zeller, Chi V. Dang& Joshua T. Mendel. c-Myc- regulated microRNAs modulate E2F1 expression. Nature 2005 Jun 9;435(7043):839-43 http://www.nature.com/nature/journal/v435/n7043/pdf/nature03677.pdf Rebecca Winkelmann Sinclair LV, Finlay D, Feijoo C, Cornish GH, Gray A, Ager A, Okkenhaug K, Hagenbeek TJ, Spits H, Cantrell DA. Phosphatidylinositol-3-OH kinase and nutrient-sensing mTOR pathways control T lymphocyte trafficking. http://www.ncbi.nlm.nih.gov/pubmed/18391955? ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum <http://www.ncbi.nlm.nih.gov/pubmed/18391955? ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum>
  • 12. Journal Club – MOLIM Time: Thursday Apr 17, 2008, 17pm Location: NFZ, seminar room, 1st floor Coordinator: Sandra Schreiber Martina Porstner Bueno MJ, Pérez de Castro I, Gómez de Cedrón M, Santos J, Calin GA, Cigudosa JC, Croce CM, Fernández-Piqueras J, Malumbres M. Genetic and epigenetic silencing of microRNA-203 enhances ABL1 and BCR-ABL1 oncogene expression. Cancer Cell. 2008 Jun;13(6):496-506. http://www.ncbi.nlm.nih.gov/pubmed/18538733? ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Carmen Kroczek Geoff Cumming, Fiona Fidler, and David L. Vaux. Error bars in experimental biology. J Cell Biol. 2007 April 9; 177(1): 7–11. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2064100