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http://biostar.stackexchange.com/questions/17037

http://biostar.stackexchange.com/questions/17037

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Biostar17037 Document Transcript

  • 1. FASTQC-Report Pierre Lindenbaum PHD
  • 2. Basic StatisticsFilename 20A.R2.QC.fqFile type Conventional base callsEncoding Sanger / Illumina 1.9Total Sequences 115925941Filtered Sequences 0Sequence length 90%GC 42
  • 3. Per basequality graph
  • 4. Per Sequencequality graph
  • 5. Per basesequence content
  • 6. Per base GCcontent graph
  • 7. Per sequenceGC content graph
  • 8. N content graph
  • 9. Sequence length distribution
  • 10. Duplicationlevel graph
  • 11. Kmer graph