Mining the Antibodypedia

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Mining the Antibodypedia

  1. 1. Lars Juhl JensenMining the AntibodypediaResearch barely in progress seminar
  2. 2. web resource
  3. 3. commercial antibodies
  4. 4. Antibodypedia AB
  5. 5. Nature Publishing Group
  6. 6. query for a protein
  7. 7. Creative Commons
  8. 8. no download file
  9. 9. web robot
  10. 10. scraped all data
  11. 11. mapped identifiers
  12. 12. STRING
  13. 13. 579,038 antibodies
  14. 14. 16,827 human proteins
  15. 15. variable quality
  16. 16. rated for various uses
  17. 17. Western blot
  18. 18. ELISA
  19. 19. immunoprecipitation
  20. 20. immunoflourescence
  21. 21. immunohistochemistry
  22. 22. flow cytometry
  23. 23. combine these ratings
  24. 24. unified quality score
  25. 25. quality scores
  26. 26. Western blotflow cytometryimmunoflourescenceimmunohistochemistryimmunoprecipitationELISAimmunocytochemistryprotein arraygel shiftchromatin immunoprecipitationproximity ligation assayblocking/neutralizingfunctional assayradioimmunoassayimmunoelectron microscopy
  27. 27. thank you!

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