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Biological literature mining - from information retrieval to biological discovery
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Desc: 14th International Conference on Intelligent Systems for Molecular Biology, Tutorial, Fortaleza Conference Center, Fortaleza, Brazil, August 6-10, 2006
Slideshow Transcript
- Slide 1: Biological literature mining from information retrieval to biological discovery Lars Juhl Jensen EMBL, Germany jensen@embl.de
- Slide 2:Why do we need it? 2
- Slide 3: Overview • Information retrieval and entity recognition – Methodologies for finding and classifying texts – Identification of gene/protein names in text • Information extraction and text/data mining – Statistical co-occurrence and NLP methods for relation extraction – Making discoveries from text alone – Integration of text and other data types 3
- Slide 4:Status • IR, ER, and simple IE methods are fairly well established • NLP-based IE systems are rapidly improving • Methods for text mining and text/data integration are still in
