Analysis of metagenomes

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Max Planck Institute for Marine Microbiology, Bremen, Germany, August 24-25, 2007

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Analysis of metagenomes

  1. 1. Analysis of metagenomes Lars Juhl Jensen EMBL Heidelberg
  2. 2. the challenge
  3. 3. the sheer amount of data
  4. 5. what can we do with it?
  5. 6. function prediction
  6. 7. sequence homology
  7. 8. gene neighborhood
  8. 10. exploitation
  9. 11. bioremediation
  10. 13. statistical analyses
  11. 14. comparing environments
  12. 15. Underground Mine Biofilm Surface Sea Water Farm Soil Deep Sea Whale Skeleton
  13. 16. GC content
  14. 18. effective genome size
  15. 20. phylogenetic composition
  16. 22. functional fingerprints
  17. 24. visualization
  18. 26. metabolic reactions
  19. 28. saltmats are like onions …
  20. 29. … they have layers
  21. 32. Acknowledgments <ul><li>EMBL </li></ul><ul><li>Jeroen Raes </li></ul><ul><li>Christian von Mering </li></ul><ul><li>Eoghan Harrington </li></ul><ul><li>Konrad F örstner </li></ul><ul><li>Amoolya Singh </li></ul><ul><li>Takuji Yamada </li></ul><ul><li>Ivica Letunic </li></ul><ul><li>Peer Bork </li></ul><ul><li>JGI </li></ul><ul><li>Susannah Tringe </li></ul><ul><li>Phil Hugenholtz </li></ul><ul><li>Eddy Rubin </li></ul>

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