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Literature-Based Discovery (LBD) refers to the process of uncovering hidden connections that are implicit in scientific literature. Numerous hypotheses have been generated from scientific literature, …
Literature-Based Discovery (LBD) refers to the process of uncovering hidden connections that are implicit in scientific literature. Numerous hypotheses have been generated from scientific literature, which influenced innovations in diagnosis, treatment, preventions and overall public health. However, much of the existing research on discovering hidden connections among concepts have used distributional statistics and graph-theoretic measures to capture implicit associations. Such metrics do not explicitly capture the semantics of hidden connections. ...
While effective in some situations, the practice of relying on domain expertise, structured background knowledge and heuristics to complement distributional and graph-theoretic approaches, has serious limitations. ..
This dissertation proposes an innovative context-driven, automatic subgraph creation method for finding hidden and complex associations among concepts, along multiple thematic dimensions. It outlines definitions for context and shared context, based on implicit and explicit (or formal) semantics, which compensate for deficiencies in statistical and graph-based metrics. It also eliminates the need for heuristics a priori. An evidence-based evaluation of the proposed framework showed that 8 out of 9 existing scientific discoveries could be recovered using this approach. Additionally, insights into the meaning of associations could be obtained using provenance provided by the system. In a statistical evaluation to determine the interestingness of the generated subgraphs, it was observed that an arbitrary association is mentioned in only approximately 4 articles in MEDLINE, on average. These results suggest that leveraging implicit and explicit context, as defined in this dissertation, is an advancement of the state-of-the-art in LBD research.
Ph.D. Committee: Drs. Amit Sheth (Advisor), TK Prasad, Michael Raymer,
Ramakanth Kavuluru (UKY), Thomas C. Rindflesch (NLM) and Varun Bhagwan (Yahoo! Labs)
Relevant Publications (more at: http://knoesis.wright.edu/students/delroy/)
D. Cameron, R. Kavuluru, T. C. Rindflesch, O. Bodenreider, A. P. Sheth, K. Thirunarayan. Leveraging Distributional Semantics for Domain Agnostic Literature-Based Discovery (under preparation)
D. Cameron, O. Bodenreider, H. Yalamanchili, T. Danh, S. Vallabhaneni, K. Thirunarayan, A. P. Sheth, T. C. Rindflesch. A Graph-based Recovery and Decomposition of Swanson’s Hypothesis using Semantic Predications. Journal of Biomedical Informatics (JBI13), 46(2): 238–251, 2013
D. Cameron, R. Kavuluru, O. Bodenreider, P. N. Mendes, A. P. Sheth, K. Thirunarayan. Semantic Predications for Complex Information Needs in Biomedical Literature International Bioinformatics and Biomedical Conference (BIBM11), pp. 512–519, 2011 (acceptance rate=19.4%)
D. Cameron, P. N. Mendes, A. P. Sheth, V. Chan. Semantics-empowered Text Exploration for Knowledge Discovery. ACM Southeast Conference (ACMSE10), 14, 2010
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