Cytoscape
An Open Source Platform for Network Analysis and Visualization
Cytoscape is an open source platform for graph an...
Cytoscape Ecosystem
Java desktop application for network
analysis and visualization. Can generate
web application friendly...
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GraphLab Conference 2014 Cytoscape Flyer

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Overview of Cytoscape ecosystem and future plan.

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GraphLab Conference 2014 Cytoscape Flyer

  1. 1. Cytoscape An Open Source Platform for Network Analysis and Visualization Cytoscape is an open source platform for graph analysis and visualization. It is the de-facto standard tool in life science field and its core features are domain independent. Its ecosystem is open and still expanding to support emerging technologies. It is free for both academic and commercial use. - Open Source (LGPL) - Support for standard data file formats - GraphML, SIF, XGMML, GML, CSV, etc. - Flexible visualization with Visual Styles - Large selection of graph layout algorithms - Open for expansion: wide variety of Apps Features The Cytoscape Consortium www.cytoscape.org @cytoscape github.com/cytoscape
  2. 2. Cytoscape Ecosystem Java desktop application for network analysis and visualization. Can generate web application friendly data files (JSON). Expandable by Apps. Cytoscape JavaScript library for graph data visualization. Compatible with browsers and node.js. Cytoscape.js Central repository of all applications build on top of Cytoscape. Cytoscape App Store Funding for continued development and maintenance of Cytoscape is provided by the U.S. National Institute of General Medical Sciences (NIGMS) under award number GM070743. Cytoscape user support, education and new initiatives are supported by the National Resource for Network Biology (NRNB) under award numbers P41 RR031228 and GM103504. Cytoscape App Store Data Bus (Internet) Raw Data Files Annotations Experimental Data Networks Internal Databases Web Applications using Cytoscape.js Web Browsers Public Data Services NDEx Other Web Services PSICQUIC Services External Computing Resources For Graph Layout / Statistical Analysis / Data Preprocessing Interactive Analysis Shells RStudio NumPy SciPy NetworkXIPython Notebook File Hosting Services Cytoscape Desktop RESTful API Module for Cytoscape Cytoscape Apps For Data Sharing / Visualization

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