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Open Source/Open Notebook Science Talk at the North Carolina Science Blogging Conference on Jan 20, 2007 by Jean-Claude Bradley.

Open Source/Open Notebook Science Talk at the North Carolina Science Blogging Conference on Jan 20, 2007 by Jean-Claude Bradley.

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    Science Blogging Conference Bradley Talk Science Blogging Conference Bradley Talk Presentation Transcript

    • Open Source/Open Notebook Science: Doing science with blogs and wikis [email_address] Jan 20, 2007 Drexel University Chemistry Department
    • Agenda
      • This session will cover the dissemination of primary scientific information via blogs, wikis and other non-traditional vehicles
      • 1. Types of information
        • raw experimental data (Open Notebook Science)
        • analyzed data
        • hypotheses
        • “ failed” experiments
        • generalized protocols
        • traditional article format
      • 2. Issues
        • Intellectual Property
        • Referencing and claims to priority
        • Academic Validation
        • Peer Review – mandatory and elective
      • 3. Opportunities
      • Increasing productivity in terms of universally usable knowledge units
      • Making explicit the nature and quantity of work in collaborations
      • Using semantically rich formats and automation at zero publication cost – is this the way to the technological singularity?
    • Where is Science headed? WE ARE HERE
    • The Robot Scientist
      • Self-organizing reduntant processes
      • Agents can participate with zero or near-zero cost (free hosted services)
      • Fully Open Access (Read and Write)
      • Publication of all aspects of the scientific process: Open Source Science / Open Notebook Science
      How will this happen?
    • How can machines know what is important? Ask the humans
    • UsefulChem Blog
    • What chemists think is important in 2005
    • Find-A-Drug
    • Diketopiperazine Library Evolves to: on pot Ugi reaction/cyclization First iteration: Solid Support Synthesis
    • The Molecules Blog
    • The Experiments Blog
    • Comments from peers
    • The UsefulChem Wiki
    • Telling the story of the failures
    • Experiments moved to wiki
    • Experiment History
    • Experiment Edits
    • Third Party Time-Stamp on Experiment Versions
    • Monitoring experimental progress
    • How are people finding our experiments?
    • Molecules found by InChI
    • Automation in UsefulChem
    • CMLRSS feed on Bioclipse
    • CMLRSS feed on Bloglines
    • Open science connectivity More info on open source science here http://usefulchem.wikispaces.com
    • Extending the interaction outside of science
    • usefulchem.blogspot.com The blog as an integrative tool
    • usefulchem.wikispaces.com/Exp049 The wiki as the laboratory notebook
    • usefulchem.wikispaces.com/Exp049 (2 min) Graphical Mining of Data with JSpecView
    • neurodatabase.org Raw Experimental Data
    • Selected Experiments (some failed) Orgprepdaily.wordpress.com
    • Orgprepdaily.wordpress.com Vendor Reliability
    • Generalized Protocols Openwetware.org
    • Lab Notebook for intra-group communication Openwetware.org
    • Discussing Hypotheses RRResearch.blogspot.com
    • Writing Code for the Automation Component Also – Rich Apodaca, Christoph Steinbeck, Peter Murray-Rust
    •