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Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
Science Blogging Conference Bradley Talk
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Science Blogging Conference Bradley Talk

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Open Source/Open Notebook Science Talk at the North Carolina Science Blogging Conference on Jan 20, 2007 by Jean-Claude Bradley.

Open Source/Open Notebook Science Talk at the North Carolina Science Blogging Conference on Jan 20, 2007 by Jean-Claude Bradley.

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  • 1. Open Source/Open Notebook Science: Doing science with blogs and wikis [email_address] Jan 20, 2007 Drexel University Chemistry Department
  • 2. Agenda <ul><li>This session will cover the dissemination of primary scientific information via blogs, wikis and other non-traditional vehicles </li></ul><ul><li>1. Types of information </li></ul><ul><ul><li>raw experimental data (Open Notebook Science) </li></ul></ul><ul><ul><li>analyzed data </li></ul></ul><ul><ul><li>hypotheses </li></ul></ul><ul><ul><li>“ failed” experiments </li></ul></ul><ul><ul><li>generalized protocols </li></ul></ul><ul><ul><li>traditional article format </li></ul></ul>
  • 3. <ul><li>2. Issues </li></ul><ul><ul><li>Intellectual Property </li></ul></ul><ul><ul><li>Referencing and claims to priority </li></ul></ul><ul><ul><li>Academic Validation </li></ul></ul><ul><ul><li>Peer Review – mandatory and elective </li></ul></ul>
  • 4. <ul><li>3. Opportunities </li></ul><ul><li>Increasing productivity in terms of universally usable knowledge units </li></ul><ul><li>Making explicit the nature and quantity of work in collaborations </li></ul><ul><li>Using semantically rich formats and automation at zero publication cost – is this the way to the technological singularity? </li></ul>
  • 5. Where is Science headed? WE ARE HERE
  • 6. The Robot Scientist
  • 7. <ul><li>Self-organizing reduntant processes </li></ul><ul><li>Agents can participate with zero or near-zero cost (free hosted services) </li></ul><ul><li>Fully Open Access (Read and Write) </li></ul><ul><li>Publication of all aspects of the scientific process: Open Source Science / Open Notebook Science </li></ul>How will this happen?
  • 8. How can machines know what is important? Ask the humans
  • 9. UsefulChem Blog
  • 10. What chemists think is important in 2005
  • 11. Find-A-Drug
  • 12. Diketopiperazine Library Evolves to: on pot Ugi reaction/cyclization First iteration: Solid Support Synthesis
  • 13. The Molecules Blog
  • 14. The Experiments Blog
  • 15. Comments from peers
  • 16. The UsefulChem Wiki
  • 17. Telling the story of the failures
  • 18. Experiments moved to wiki
  • 19. Experiment History
  • 20. Experiment Edits
  • 21. Third Party Time-Stamp on Experiment Versions
  • 22. Monitoring experimental progress
  • 23. How are people finding our experiments?
  • 24. Molecules found by InChI
  • 25. Automation in UsefulChem
  • 26. CMLRSS feed on Bioclipse
  • 27. CMLRSS feed on Bloglines
  • 28. Open science connectivity More info on open source science here http://usefulchem.wikispaces.com
  • 29. Extending the interaction outside of science
  • 30. usefulchem.blogspot.com The blog as an integrative tool
  • 31. usefulchem.wikispaces.com/Exp049 The wiki as the laboratory notebook
  • 32. usefulchem.wikispaces.com/Exp049 (2 min) Graphical Mining of Data with JSpecView
  • 33. neurodatabase.org Raw Experimental Data
  • 34. Selected Experiments (some failed) Orgprepdaily.wordpress.com
  • 35. Orgprepdaily.wordpress.com Vendor Reliability
  • 36. Generalized Protocols Openwetware.org
  • 37. Lab Notebook for intra-group communication Openwetware.org
  • 38. Discussing Hypotheses RRResearch.blogspot.com
  • 39. Writing Code for the Automation Component Also – Rich Apodaca, Christoph Steinbeck, Peter Murray-Rust
  • 40. &nbsp;

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