0
Zero to a BioinformaticsAnalysis Platform in Four Minutes    Enis Afgan, Brad Chapman, Konstantinos Krampis, James Taylor ...
Australian National Research CloudProvide computational infrastructure to support researchersneeds    Compute and Storage ...
What’s required for genomics?✔ •    Compute✔ •    Storage  •    Data resources       o  Ensembl, dbSNP, etc  •    Tools  •...
Genomics Virtual Lab
Compute + Storage =   IaaS
shell vs. IDE   We want it now
What’s required for genomics?•    Compute•    Storage•    Data resources     o  Ensembl, dbSNP, etc•    Tools•    Visualis...
Galaxy                          y       y                     CloudManCloudBioLinux            y     y           BioCloudC...
Playing together•    CloudBioLinux     o  Quickly build-your-own tool suite / ready to roll     o  Graphical & command lin...
•    Bundle infrastructure with an analysis tool suite, quickly     o  Validate our approach     o  Easier to maintain and...
And one new thing…blend o    A python library for interacting with Galaxy’s API o    And CloudMan o    And BioCloudCentral
Request compute infrastructureManipulate compute infrastructureUpload data and run analysesDocs and examplesTest          ...
Docs andexamples includedhttp://blend.readthedocs.org/
Playing together•    CloudBioLinux     o  Build-your-own tool suite / ready to roll     o  Graphical & command line access...
Questions?  cloudbiolinux.org  usecloudman.org  usegalaxy.org  biocloudcentral.org  blend.readthedocs.org  Visit the poste...
E Afgan - Zero to a bioinformatics analysis platform in four minutes
Upcoming SlideShare
Loading in...5
×

E Afgan - Zero to a bioinformatics analysis platform in four minutes

573

Published on

Presentation at BOSC2012 by E Afgan - Zero to a bioinformatics analysis platform in four minutes

Published in: Technology
0 Comments
1 Like
Statistics
Notes
  • Be the first to comment

No Downloads
Views
Total Views
573
On Slideshare
0
From Embeds
0
Number of Embeds
0
Actions
Shares
0
Downloads
10
Comments
0
Likes
1
Embeds 0
No embeds

No notes for slide

Transcript of "E Afgan - Zero to a bioinformatics analysis platform in four minutes"

  1. 1. Zero to a BioinformaticsAnalysis Platform in Four Minutes Enis Afgan, Brad Chapman, Konstantinos Krampis, James Taylor BOSC 2012 Long Beach, CA
  2. 2. Australian National Research CloudProvide computational infrastructure to support researchersneeds Compute and Storage (~25,000 cores + ? PB)
  3. 3. What’s required for genomics?✔ •  Compute✔ •  Storage •  Data resources o  Ensembl, dbSNP, etc •  Tools •  Visualisation •  Protocols •  Expertise •  Community!
  4. 4. Genomics Virtual Lab
  5. 5. Compute + Storage = IaaS
  6. 6. shell vs. IDE We want it now
  7. 7. What’s required for genomics?•  Compute•  Storage•  Data resources o  Ensembl, dbSNP, etc•  Tools•  Visualisation•  Protocols•  Expertise•  Community!
  8. 8. Galaxy y y CloudManCloudBioLinux y y BioCloudCentral.org
  9. 9. Playing together•  CloudBioLinux o  Quickly build-your-own tool suite / ready to roll o  Graphical & command line access•  CloudMan o  Create a scalable and shareable processing platform•  Galaxy o  Do exploratory analysis•  BioCloudCentral.org o  Get started easily
  10. 10. •  Bundle infrastructure with an analysis tool suite, quickly o  Validate our approach o  Easier to maintain and replicate•  Expose it all via at a variety of interfaces o  Support meta-analysis workflow•  Move forward o  Add new features o  Start using it
  11. 11. And one new thing…blend o  A python library for interacting with Galaxy’s API o  And CloudMan o  And BioCloudCentral
  12. 12. Request compute infrastructureManipulate compute infrastructureUpload data and run analysesDocs and examplesTest Automate repetitive tasksDistribute
  13. 13. Docs andexamples includedhttp://blend.readthedocs.org/
  14. 14. Playing together•  CloudBioLinux o  Build-your-own tool suite / ready to roll o  Graphical & command line access•  CloudMan o  Create a scalable and shareable processing platform•  BioCloudCentral.org o  Get started easily•  Galaxy o  Do exploratory analysis•  Blend library o  Automate repetitive tasks: analysis AND infrastructure
  15. 15. Questions? cloudbiolinux.org usecloudman.org usegalaxy.org biocloudcentral.org blend.readthedocs.org Visit the poster session (poster #10)
  1. A particular slide catching your eye?

    Clipping is a handy way to collect important slides you want to go back to later.

×