Creating Biology Pipelines with               BioUnoBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ac...
Who a m I    B r u n o P . K in o s h it a    27 yo, Brazilian, from Sao Paulo, Sao Paulo    Software P r o g r a m m e...
W h a t  s B io U n o ?    A n O p e n S o u r c e p r o je c t t h a t    u s e s c o n t in u o u s in t e g r a t io n...
B io U n o . W h o c r e a t e d         it ? H o w ? W h e n ?     It is an interesting story that started some time    ...
W h y J e n k in s ?    An a w e s ome O pe n S ourc e    c o m m u n i t y (more than 100 developers)    Simple w e b i...
N e xt s te p s    Finish the u p d a t e c e n t e r infrastructure    Write more p l u g -i n s    Enhance the user/d...
DEMOBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
A n y q u e s t io n s ?Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p i...
Th a n k yo u ! D a n k e !         O b r ig a d o ! G r a c ia s !           M e r c i! A r ig a t o u !          w w w ....
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B Kinoshita - Creating biology pipelines with BioUno

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Presentation at BOSC2012 by B Kinoshita - Creating biology pipelines with BioUno

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B Kinoshita - Creating biology pipelines with BioUno

  1. 1. Creating Biology Pipelines with BioUnoBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
  2. 2. Who a m I B r u n o P . K in o s h it a 27 yo, Brazilian, from Sao Paulo, Sao Paulo Software P r o g r a m m e r @ T u p i L a b s Participating in several OSS (Apache Commons, tap4j, Jenkins, TestLink, TunesViewer, …) k in o w @ p a c h e . o r g a @ i n o w – Twitter/GitHub/FreeNode kBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
  3. 3. W h a t s B io U n o ? A n O p e n S o u r c e p r o je c t t h a t u s e s c o n t in u o u s in t e g r a t io n t o o ls a n d t e c h n iq u e s t o c r e a t e b io lo g y p ip e lin e s One of the tools used is J e n k i n s , an O p e n S o u r c e build server It has p l u g - i n s ... And an update center...Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg Then why didnt you name it bio-jh ://www.tu p ilab s.co m ttp enkins?
  4. 4. B io U n o . W h o c r e a t e d it ? H o w ? W h e n ? It is an interesting story that started some time ago in Brazil...  in an Irish PubBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
  5. 5. W h y J e n k in s ? An a w e s ome O pe n S ourc e c o m m u n i t y (more than 100 developers) Simple w e b interface J o b s c h e d u le a n d m a n a g e m e n t N o t if ic a t io n s C l o u d computing B i g D a t a (Hadoop) noBru Existing integration with many programming P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
  6. 6. N e xt s te p s Finish the u p d a t e c e n t e r infrastructure Write more p l u g -i n s Enhance the user/developer d o c u m e n t a t io n Prepare a small public c o m p u t e r f a c i l i t y for BioUno Find new d e v e l o p e r s & u s e r s Comparison with Taverna, Galaxy and otherBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rg similar toolsh ttp ://www.tu p ilab s.co m
  7. 7. DEMOBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
  8. 8. A n y q u e s t io n s ?Bru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m
  9. 9. Th a n k yo u ! D a n k e ! O b r ig a d o ! G r a c ia s ! M e r c i! A r ig a t o u ! w w w . b io u n o . o r g k in o w @ p a c h e . o r g a @ in o w , @ u p ila b s k tBru n o P. Kin o sh ita - b ru n o @ tu p ilab s.co m – kin o w@ ap ach e .o rgh ttp ://www.tu p ilab s.co m

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