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Jaspug 2010

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presentation at JASPUG 2010 by T.I. Ohta …

presentation at JASPUG 2010 by T.I. Ohta
all fonts from http://www.josbuivenga.demon.nl/

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Transcript

  • 1. Analyzing Large Scale Data from Next Gen. Sequencer with TIBCO Spotfire
  • 2. by DBCLS: DataBase Center for LifeScience transcriptome analysis team Tazro I. Ohta
  • 3. What is the “data” for the wet scientist in the Lab of biology... “ ”
  • 4. then: photo, figure, graph... now: digital data, as large as you can’t handle without computer. but all the biologists cannot use computer well, who tells how to deal with it?
  • 5. therefore, we are.
  • 6. #togofarm is the research team at DBCLS for the bioinformatics study. we’re working to make lifescience in Japan more efficient. “ ”“ ” ” ”
  • 7. TIBCO Spotfire as the tool for lifescience data ( we just start tryin’! ) Spotfire
  • 8. comparing transcriptome between NGS and EST data: human brain transcriptome NGS EST
  • 9. sampling, sequencing, and got data, but can’t deal with it, so he send it to collaborator... and data is back. …
  • 10. case 1: Perfect!! compared with reference, list and beautiful graph, nothing to be done! ...but this is a rare case. “ ” is not equal to photo by http://www.cytoscape.org/
  • 11. case 2: almost good, but just a list of the value, need to visualize
  • 12. just import data to Spotfire, and visualize on GUI even if you can’t do only this, take it to your student.. Spotfire GUI
  • 13. case 3: only the result of basic processing, and that’s all. …
  • 14. import data to Spotfire add column + add match Spotfire ID only on TogoTV! ” TV” http://togotv-curated.dbcls.jp/
  • 15. Spotfire 3×!!!
  • 16. ...and one more thing
  • 17. Spotfire Web Player is powerful tool for research collaboration Spotfire Web Player
  • 18. Integromics Biomarker Discovery for TIBCO Spotfire we also have plan to use this to make processing simple and easy. IBD
  • 19. please give us any good ideas!