CACAO
Community
Assessment of
Community
Annotation with
Ontologies
i.e. Undergrads doing functional annotation using Gene ...
Basic problem for Community
Annotation
• People are enthusiastic in theory but too busy in
practice
• Our approach: annota...
Student curation focused on IEA
validation
• Without much experience with GO, students can still
– look for experiments to...
CACAO 0.1
• 20 students volunteered
• 16 students completed it ~ 2.5 weeks later
• Mini GO camp
– meeting 1: Survey/GO ove...
Results
• Got many more annotations
than we expected
• Quality was not bad
• Survey provided insight into
student strategi...
Lessons/Refinements
• Students loved the competition
• Need to tweak the training
– More on finding appropriate papers
• N...
Scoreboard extension
Scoreboard extension
CACAO 1.0
• Recruiting participants for Fall 2010
– ASM, ASMCUE, AgBase, …
– Not just E. coli!!
• We will offer
– Content ...
Upcoming SlideShare
Loading in...5
×

Go camp 2010_cacao

1,697

Published on

0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total Views
1,697
On Slideshare
0
From Embeds
0
Number of Embeds
2
Actions
Shares
0
Downloads
4
Comments
0
Likes
0
Embeds 0
No embeds

No notes for slide

Go camp 2010_cacao

  1. 1. CACAO Community Assessment of Community Annotation with Ontologies i.e. Undergrads doing functional annotation using Gene Ontology
  2. 2. Basic problem for Community Annotation • People are enthusiastic in theory but too busy in practice • Our approach: annotation as a teaching activity provides incentives to participate (for some)
  3. 3. Student curation focused on IEA validation • Without much experience with GO, students can still – look for experiments to support IEA or ISS annotations – deprecate incorrect annotations
  4. 4. CACAO 0.1 • 20 students volunteered • 16 students completed it ~ 2.5 weeks later • Mini GO camp – meeting 1: Survey/GO overview – meeting 2: annotate 2 papers as group • Paper 1: everyone • Paper 2: divided into teams • Each team got a list of E. coli genes; annotation on EcoliWiki • meeting 3: Survey/Evaluate annotations/announce winners – Peer review by competition = Teams steal points by correcting annotations
  5. 5. Results • Got many more annotations than we expected • Quality was not bad • Survey provided insight into student strategies – Conversion of non-GO functional annotations – new annotations
  6. 6. Lessons/Refinements • Students loved the competition • Need to tweak the training – More on finding appropriate papers • Need multiple rounds – Students did not use the mentors enough • More time for challenges • Better wiki tools for mentors/judges to track student annotation
  7. 7. Scoreboard extension
  8. 8. Scoreboard extension
  9. 9. CACAO 1.0 • Recruiting participants for Fall 2010 – ASM, ASMCUE, AgBase, … – Not just E. coli!! • We will offer – Content related to GO/genomics/function – Support for assessment • Rubrics, surveys etc. – Plans for possible publications • Incentives – Credit for innovative teaching on their campuses – NSF broader impacts – inter-institution teams for recruiting
  1. A particular slide catching your eye?

    Clipping is a handy way to collect important slides you want to go back to later.

×