Towards a Machine-Actionable Scholarly Communication System

Towards Machine-Actionable Scholarly Communication herbert van de sompel@hvdsomp h"p://www.ﬂickr.com/photos/feuilllu/3021807255/

Patterson. Re-engineering the functions of journals OAI7 Workshop presentation http://indico.cern.ch/contributionDisplay.py?sessionId=8&contribId=20&confId=103325

http://www.flickr.com/photos/irrezolut/2974930837/

•  Augmentation of the scholarly record with a machine actionable substrate •  Integration of datasets into the scholarly record •  Exposure of scholarly process and its integration in the scholarly recordVan de Sompel & Lagoze All Aboard: Toward a Machine-Friendly Scholarly CommunicationSystem. In: The Fourth Paradigm. h"p://research.microso=.com/en-‐us/collaboraAon/fourthparadigm/

•  Unique identifiers (URI) for every Thing•  Typed Links, Vocabularies, Ontologies (URI, RDF, RDFS, OWL)•  Ability to publish information about a Thing•  Ability for human and machine to look Things up (HTTP)

Exhibit 1: My Work in this Realm

OAI Object Reuse & Exchange http://www.openarchives.org/ore/

Complex Objects

Open AnnotaAon http://www.openannotation.org/

Yuma Map AnnotaAon Haslhofer et. al. (2011) The Open Annotation Collaboration (OAC) Data Model MMWeb 2011http://arxiv.org/abs/1106.5178

Memento: Time Travel for the Web 2010 Digital Preservation Coalition Digital Preservation Award http://mementoweb.org

Version NavigaAon: Pic of the Day http://www.mementoweb.org/demo/picoftheday.mov

Version NavigaAon: Time Series Analysis Van de Sompel et. al. An HTTP-‐Based Versioning Mechanism for Linked Data LDOW 2009 h"p://arxiv.org/abs/1003.3661

Exhibit 2: Nanopublications h"p://www.ﬂickr.com/photos/stannate/1369623187/

The Paper Deluge •  Too much scholarly publicaAons to consume •  Too hard to make cross-‐discipline connecAons, to combine exisAng disparate ﬁndings to arrive at new insights Palmer et. al. (2007) Weak informa<on work in scien<ﬁc discovery Inf. Process. Manage. 43(3) 808–820 h"p://dx.doi.org/10.1016/j.ipm.2006.06.003Ru"enberg et. al. Advancing transla<onal research with the Seman<c Web BMC Bioinf. 8(suppl. 3) S2 h"p://dx.doi.org/10.1186/1471-‐2105-‐8-‐S3-‐S2

Literature MiningVerspoor et. al. The textual characteris<cs of tradi<onal and Open Access scien<ﬁc journals are similar. BMC Bioinforma:cs 2009, 10:183 h"p://dx.doi.org/10.1186/1471-‐2105-‐10-‐183

Entity Identifiers & Ontologies http://www.obofoundry.org/

Nanopublication http://www.nanopub.org/

A Fix for the NerdsGroth et. al. The Anatomy of a Nano-publication Information Services and Use 30(1), p.51-56,2010 http://iospress.metapress.com/index/FTKH21Q50T521WM2.pdf

Publish, Merge, Search, Reason, Predict, IntegrateClare et. al. Exploring the Genera<on and Integra<on of Publishable Scien<ﬁc Facts Using the Concept of Nano-‐publica<ons ESWC 2011 https://svn.kwarc.info/repos/clange/conferences/eswc2011/sepublica/proceedings/999990013/999990013.pdf

Mons (2011) Nanopublications OAI7 Workshop presentation http://indico.cern.ch/contributionDisplay.py?sessionId=13&contribId=38&confId=103325

Smit & van der Graaf (2011) Journal Article Mining h"p://www.publishingresearch.net/documents/PRCSmitJAMreport20June2011VersionofRecord.pdf

Exhibit 3: Executable Papers http://www.jeff-barr.com/?p=1446

Utopia Reader Attwood et al. (2009) Utopia document and the Semantic Biochemical Journal. EMBnet.news ,15 (4). http://journal.embnet.org/index.php/embnetnews/article/viewArticle/45/151

h"p://www.executablepapers.com/about-‐challenge.html

Executable Paper: Conceptual View This space intenAonally blank. Figure 1 of http://dx.doi.org/10.1016/j.procs.2011.04.064 goes here but is copyrighted. Nowakowski et al. (2011) The Collage Authoring Environment Procedia Computer Science v4 http://dx.doi.org/10.1016/j.procs.2011.04.064

Collage: Authoring and Reading This space intenAonally blank. Figure 2 of http://dx.doi.org/10.1016/j.procs.2011.04.064 goes here but is copyrighted. Nowakowski et al. (2011) The Collage Authoring Environment Procedia Computer Science v4 http://dx.doi.org/10.1016/j.procs.2011.04.064

Collage: Rendering a Paper This space intenAonally blank. Figure 3 of http://dx.doi.org/10.1016/j.procs.2011.04.064 goes here but is copyrighted. Nowakowski et al. (2011) The Collage Authoring Environment Procedia Computer Science v4 http://dx.doi.org/10.1016/j.procs.2011.04.064

Link Rot, CitaAon Rot, Service Rot Sanderson et al. (2011) Analyzing the Persistence of Referenced Web Resources with Memento Open Repositories Conference Paper http://arxiv.org/abs/1105.3459

Exhibit 4: Citationh"p://www.ﬂickr.com/photos/themacinator/4183736814/

Citation•  Scholarly record expands: •  Papers •  Datasets •  NanopublicaAons •  Workﬂows •  So=ware •  … •  More ways to get credit

Move from Journal centric …

… to Contributor centric

Automatic Citation Graph1.  Article splash page in open access, crawl-enabled.2.  Splash page with recognizable References section3.  References that URI-link to the cited article h"p://portal.acm.org

Open Data for Metrics http://openurl.ac.uk/doc/data/thedata.html

Keep Your Eye On The Ball h"p://www.ﬂickr.com/photos/garryknight/3595141669/

Ownershiphttp://www.flickr.com/photos/vectorportal/5047619590/

Costhttp://www.flickr.com/photos/mammal/3455272493/

PersistenceThe Long Now’s 10.000 Year Clock http://longnow.org/clock/prototype1/

Towards Machine-Actionable Scholarly Communication herbert van de sompel@hvdsomp h"p://www.ﬂickr.com/photos/feuilllu/3021807255/

http://public.lanl.gov	264
http://ws-dl.blogspot.com	193
http://paper.li	4
http://a0.twimg.com	4
http://ws-dl.blogspot.in	2
http://www.slideshare.net	1
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Towards a Machine-Actionable Scholarly Communication System

by Herbert Van de Sompel on Jul 03, 2011

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Towards a Machine-Actionable Scholarly Communication System — Presentation Transcript