Your SlideShare is downloading. ×
0
KDGV
(Korean Database of Genomic Variants)



     http://ksnp.cdc.go.kr
             2009. 4
KDGV(Korean Database of Genomic Variants)




KSNP Database   KARE Database   KAREdb   GWASaid

                                   
    
       

                    
               
                       
          ...

           
       
                           
           

                              

                          
 ...

               
       
                   
            


             
                   
   
               
   

   ...
KARE Database Overview
• Based on version 1.69 of GMOD GBrowse

• Contains all of the gene information normally present in...

               
           
                    
               
           
       

                                
  ...
Database summary statistics

Total KARE SNP entries:
 2,096,558(77% imputed)
Cluster Plot : 500,568


dbSNP: Build 129
Hap...
KARE Database Browser Home Page
Search methods

     

 
       

             
   

Keyword search

           

               
                


           

           
                


           

 ...
Meta word search: terms
Cluster plot search
               Download compressed image file




dbSNP rs#
Chromosome band search
Search Result
Search and Navigation track



Search result track
 - Overview track
 - Region track
 - Detail track




  T...
KARE Data track config
• Genotyped Allele Frequency view with pie chart

• These are selected from the “Tracks” menu and ap...
Browser Navigation
                                                                         Zoom in
Left move             ...
HapMap & KHapMap Information
NCBI dbSNP Information
Genes, Contig, GC Content information
KARE SNP Information

                       Allele
                       information

                        Genotype
 ...
KARE SNP Information



                  Cluster Plot



                  High resolution
                  image
LD plot Information
                              Based on data from HapMap populations




Populations selectable from
“C...
http://cgs.cdc.go.kr
http://ksnp.cdc.go.kr
http://www.ngri.go.kr/SNP
Upcoming SlideShare
Loading in...5
×

Korean Database of Genomic Variants

1,637

Published on

Korean Database of Genomic Variants, KDGV

Published in: Technology, Design
0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total Views
1,637
On Slideshare
0
From Embeds
0
Number of Embeds
1
Actions
Shares
0
Downloads
20
Comments
0
Likes
0
Embeds 0
No embeds

No notes for slide

Transcript of "Korean Database of Genomic Variants"

  1. 1. KDGV (Korean Database of Genomic Variants) http://ksnp.cdc.go.kr 2009. 4
  2. 2. KDGV(Korean Database of Genomic Variants) KSNP Database KARE Database KAREdb GWASaid
  3. 3. 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 KSNP Database
  4. 4. 
 
 
 
 
 

 
 
 
 
 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 GWASaid 
 
 
 

  5. 5. 
 
 
 
 
 
 
 
 
 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 KAREdb
  6. 6. KARE Database Overview • Based on version 1.69 of GMOD GBrowse • Contains all of the gene information normally present in International HapMap project • Ensembl genes, Entrez genes, dbSNP SNPs, Copy Number Variation • Please send questions, problems or apparent errors to hongiiv@nih.go.kr
  7. 7. 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 KARE Database
  8. 8. Database summary statistics Total KARE SNP entries: 2,096,558(77% imputed) Cluster Plot : 500,568 dbSNP: Build 129 HapMap: 2008. 06
  9. 9. KARE Database Browser Home Page
  10. 10. Search methods 
 
 
 
 

  11. 11. Keyword search 
 

 
 
 
 

 
 
 
 

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

 
 

 
 
 
 
 
 

  12. 12. Meta word search: terms
  13. 13. Cluster plot search Download compressed image file dbSNP rs#
  14. 14. Chromosome band search
  15. 15. Search Result Search and Navigation track Search result track - Overview track - Region track - Detail track Track configure Display setting Add your own data
  16. 16. KARE Data track config • Genotyped Allele Frequency view with pie chart • These are selected from the “Tracks” menu and appear as tracks near the bottom of the display • Tracks for all SNPs and the SNPs on selected HapMap are also available
  17. 17. Browser Navigation Zoom in Left move Right move Recenter Region size Mouse drag Region zoom in/out
  18. 18. HapMap & KHapMap Information
  19. 19. NCBI dbSNP Information
  20. 20. Genes, Contig, GC Content information
  21. 21. KARE SNP Information Allele information Genotype frequency Table View
  22. 22. KARE SNP Information Cluster Plot High resolution image
  23. 23. LD plot Information Based on data from HapMap populations Populations selectable from “Configure... LD Plot” menu
  24. 24. http://cgs.cdc.go.kr http://ksnp.cdc.go.kr http://www.ngri.go.kr/SNP
  1. A particular slide catching your eye?

    Clipping is a handy way to collect important slides you want to go back to later.

×