SMBE Satellite Meeting on Eukaryotic -Omics

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Meeting welcome and overview of Eukaryotic -Omics ressearch at UC Davis

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  • Regardless of methdology, focus on:Species assemblages and taxonomic diversityCommunity patterns over space and time – Cosmoplitanism or Regionally restricted?Community changes as a result of natural/human disturbance
  • SMBE Satellite Meeting on Eukaryotic -Omics

    1. 1. #SMBEeuksApril 29 – May 2, 2013UC Davis Conference Center
    2. 2. Logistics• Wi-Fi• Lunch/Dinner
    3. 3. Logistics• Wi-Fi• Lunch/Dinner• Instructions for posters• Instructions for talks• Sponsor thanks• Prize for travel award recipients
    4. 4. It all started in Florida…
    5. 5. 2011 Catalysis Meeting at NESCent
    6. 6. Future Goal:ResearchCoordinationNetwork
    7. 7. Building a Eukaryotic Community• Relaxed meeting schedule• Emphasis on speaker diversity• Breakout groups on Thursday - outputs• Get to know your neighbor – socialize!• Tweet! (Profusely, if possible)
    8. 8. Photo Credit: J. Baldwin, M. Mundo-Ocampo
    9. 9. Biodiversity?Phylogeography?Environmental Impacts?
    10. 10. Extract Environmental DNAAmplify rRNAHigh-throughputsequencingCommunity analysisDiverse marine communityEASYEASYEASYVERYDifficult!
    11. 11. http://phylosift.wordpress.com
    12. 12. Explicitly Phylogenetic ApproachesAlignedenvironmentalsequencesGuide TreeEvolutionaryPlacement ofshort reads
    13. 13. We provide:• Support for Paired End (raw) Illumina data• Marker gene data forBacteria, Archaea, Eukaryotes, Viruses• Taxonomy assignments based on probabilitydistributions over a reference phylogeny• Complement to existing tools – QIIME, etc.– Inputs/outputs will be compatible for use withother software tools
    14. 14. Great!Not BadGetting Tricky…
    15. 15. MarineMetagenomeTree PlacementSing Tree - Guppy
    16. 16. AcknowledgementsUC Davis• Jonathan Eisen• Aaron Darling• Guillaume Jospin• Dongying WuPhyloSift Software Development on Github:https://github.com/gjospin/PhyloSiftGoogle Group for user support:https://groups.google.com/d/forum/phylosiftTwitter: @PhyloSift

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