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SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
SMBE Satellite Meeting on Eukaryotic -Omics
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SMBE Satellite Meeting on Eukaryotic -Omics

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Meeting welcome and overview of Eukaryotic -Omics ressearch at UC Davis

Meeting welcome and overview of Eukaryotic -Omics ressearch at UC Davis

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  • Regardless of methdology, focus on:Species assemblages and taxonomic diversityCommunity patterns over space and time – Cosmoplitanism or Regionally restricted?Community changes as a result of natural/human disturbance
  • Transcript

    • 1. #SMBEeuksApril 29 – May 2, 2013UC Davis Conference Center
    • 2. Logistics• Wi-Fi• Lunch/Dinner
    • 3. Logistics• Wi-Fi• Lunch/Dinner• Instructions for posters• Instructions for talks• Sponsor thanks• Prize for travel award recipients
    • 4. It all started in Florida…
    • 5. 2011 Catalysis Meeting at NESCent
    • 6. Future Goal:ResearchCoordinationNetwork
    • 7. Building a Eukaryotic Community• Relaxed meeting schedule• Emphasis on speaker diversity• Breakout groups on Thursday - outputs• Get to know your neighbor – socialize!• Tweet! (Profusely, if possible)
    • 8. Photo Credit: J. Baldwin, M. Mundo-Ocampo
    • 9. Biodiversity?Phylogeography?Environmental Impacts?
    • 10. Extract Environmental DNAAmplify rRNAHigh-throughputsequencingCommunity analysisDiverse marine communityEASYEASYEASYVERYDifficult!
    • 11. http://phylosift.wordpress.com
    • 12. Explicitly Phylogenetic ApproachesAlignedenvironmentalsequencesGuide TreeEvolutionaryPlacement ofshort reads
    • 13. We provide:• Support for Paired End (raw) Illumina data• Marker gene data forBacteria, Archaea, Eukaryotes, Viruses• Taxonomy assignments based on probabilitydistributions over a reference phylogeny• Complement to existing tools – QIIME, etc.– Inputs/outputs will be compatible for use withother software tools
    • 14. Great!Not BadGetting Tricky…
    • 15. MarineMetagenomeTree PlacementSing Tree - Guppy
    • 16. AcknowledgementsUC Davis• Jonathan Eisen• Aaron Darling• Guillaume Jospin• Dongying WuPhyloSift Software Development on Github:https://github.com/gjospin/PhyloSiftGoogle Group for user support:https://groups.google.com/d/forum/phylosiftTwitter: @PhyloSift

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