Hilmar Lapp

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I enjoy combining my dual background in biology and computer science with analytical thinking and creativity to solve scientific informatics problems in dynamic and rapidly changing research environments. I have a track record of successful project and team leadership at the interface between experimental biologists, computer scientists, and software engineers. My programming experience extends over more than two decades, and includes building commercial applications, writing real-time data acquisition software, and developing bioinformatics data integration systems and standards. My research interests are in reusable and interoperable software and data, large-scale data integration, an..

semantic web phylogenetics phenoscape open science open source obf phenotype reasoning phyloinformatics owl bosc2014 data integration data sharing evolution biodiversity hackathon bosc_2008 biosql ismb2008 biology taxonomy computable morphology comparative methods bioinformatics ievobio2014 research informatics reproducibility phyloreferencing tetrapod evolution data linking data synthesis scholarly communication data archiving data reuse miapa ontology semanticweb phylogenetics standard gsc15 scalable vector graphics homology vocamp collaborative science collaboration cyberinfrastructe open data ievobio2012 article figure phylogeny illustration reuse bosc2012 tdwg2008 tdwg nescent collaborative development

Activity
About

Hilmar Lapp

Presentations

BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features

Lapp, ISCB Software Sharing Symposium

Towards a Simple, Standards-Compliant, and Generic Phylogenetic Database

OBF Address at BOSC 2012

Liberating Our Beautiful Trees: A Call to Arms.

Open science, open-source, and open data: Collaboration as an emergent property?

Reasoning over phenotype diversity, character change, and evolutionary descent

Phyloinformatics VoCamp

Bringing reason to phenotype diversity, character change, and common descent

The blessing and the curse: handshaking between general and specialist data repositories

The MIAPA ontology: An annotation ontology for validating minimum metadata reporting for phylogenetic analyses

OBF Address at BOSC 2013

PhyloCommons: Sharing, annotating, and reusing Phylogenies

The Dryad Digital Repository: Published data as part of the greater data ecosystem

Semantics of and for the diversity of life:  Opportunities and perils of trying to reason on the frontier

Reproducible Science - Panel at iEvoBio 2014

Open Bioinformatics Foundation: 2014 Update & Some Introspection

Towards ubiquitous OWL computing: Simplifying programmatic authoring of and querying with OWL axioms

Rphenoscape:  Connecting the semantics of evolutionary morphology to comparative phylogenetics

Integrating data with phylogenies, at scale

Of Trees and Owl:  The challenges of reasoning over the semantics of shared descent

Likes

Data sharing and the tenure and promotion process

Carleton Biology talk : March 2014

Semantic tools for aggregation of morphological characters across studies

What Bioinformaticians Need to Know About Digital Publishing Beyond the PDF

Creating a sustainable business model for a digital repository: the Dryad experience - Peggy Schaeffer - RDAP12

ISMB/ECCB 2013 Keynote Goble Results may vary: what is reproducible? why do open science and who gets the credit?

#ievobio Keynote - June 26, 2013

Right time, right place, to change the world

Data reuse and scholarly reward: understanding practice and building infrastructure

Jonathan Eisen talk on "Open Science" at #BOSC2012 #ISMB

If we build it will they come? BOSC2012 Keynote Goble

Phylotastic @iEvoBio

Using Fedora Commons To Create A Persistent Archive