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BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features
 

BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features

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    BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features Presentation Transcript

    • BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features Hilmar Lapp (NESCent), Richard Holland, Aaron Mackey, William Piel, Mark Schreiber BOSC 2008
    • What is BioSQL? Interoperable persistence layer for Bio* supporting • BioPerl • Biojava • Biopython • BioRuby
    • What is BioSQL? Generic & extensible relational model • sequences • features • sequence and feature annotation • a reference taxonomy • ontologies, controlled vocabularies
    • What is BioSQL? Generic & extensible relational model • sequences • features • sequence and feature annotation • a reference taxonomy • ontologies, controlled vocabularies • phylogenetic trees or networks