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DNA




Hans Hurtado
Deoxyribonucleic Acid

It is a nucleic acid containing the genetic instructions
used in the development and functioning of all known
living organisms (with the exception of RNA viruses).
The DNA segments carrying this genetic information
are called genes. Likewise, other DNA sequences have
structural purposes, or are involved in regulating the
use of this genetic information. Along with RNA and
proteins, DNA is one of the three major
macromolecules that are essential for all known forms
of life.
DNA consists of two long polymers of simple units called nucleotides,
 with backbones made of sugars and phosphate groups joined by ester bonds.
 These two strands run in opposite directions to each other and are
 therefore anti-parallel. Attached to each sugar is one of four types of
 molecules called nucleobases (informally, bases).
DNA is a long polymer made from repeating units
called nucleotides. As first discovered by James D.
Watson and Francis Crick, the structure of DNA of all species
comprises two helical chains each coiled round the same
axis, and each with a pitch of
34 Ångströms (3.4 nanometres) and a radius of
10 Ångströms (1.0 nanometres). According to another study,
when measured in a particular solution, the DNA chain
measured 22 to 26 Ångströms wide (2.2 to 2.6 nanometres),
and one nucleotide unit measured 3.3 Å (0.33 nm) long.
The DNA double helix is stabilized
primarily by two forces: hydrogen
bonds between nucleotides and base-
stacking interactions among
the aromatic nucleobases. In the
aqueous environment of the cell, the
conjugated π bonds of nucleotide bases
align perpendicular to the axis of the
DNA molecule, minimizing their
interaction with the solvation shell and
therefore, the Gibbs free energy. The
four bases found in DNA
are adenine (abbreviated
A), cytosine (C), guanine (G)
and thymine (T). These four bases are
attached to the sugar/phosphate to form
the complete nucleotide, as shown
for adenosine monophosphate.
Nucleobases

    The nucleobases are classified into two types:
     the purines, A and G, being fused five- and six-
     membered heterocyclic compounds, and
     the pyrimidines, the six-membered rings C and T. A fifth
     pyrimidine nucleobase, uracil (U), usually takes the
     place of thymine in RNA and differs from thymine by
     lacking a methyl group on its ring. Uracil is not usually
     found in DNA, occurring only as a breakdown product
     of cytosine. In addition to RNA and DNA a large numbe
     of artificial nucleic acid analogues have also been
     created to study the proprieties of nucleic acids, or for
     use in biotechnology.
Grooves
     Twin helical strands form the
     DNA backbone. Another
     double helix may be found by
     tracing the spaces, or grooves,
     between the strands. These
     voids are adjacent to the base
     pairs and may provide
     a binding site. As the strands
     are not directly opposite each
     other, the grooves are
     unequally sized. One groove,
     the major groove, is 22 Å wide
     and the other, the minor
     groove, is 12 Å wide.
Alternate DNA structures




From left to right, the structures of A, B and Z DNA
DNA exists in many possible conformations that
include A-DNA, B-DNA, and Z-DNA forms, although, only
B-DNA and Z-DNA have been directly observed in
functional organisms.The conformation that DNA adopts
depends on the hydration level, DNA sequence, the
amount and direction of supercoiling, chemical
modifications of the bases, the type and concentration of
metal ions, as well as the presence of polyamines in
solution.
Quadruplex structures



At the ends of the linear chromosomes are
specialized regions of DNA called telomeres. The
main function of these regions is to allow the cell
to replicate chromosome ends using the
enzyme telomerase, as the enzymes that normally
replicate DNA cannot copy the extreme 3′ ends of
chromosomes.These specialized chromosome
caps also help protect the DNA ends, and stop
the DNA repair systems in the cell from treating
them as damage to be corrected.
Evolution


DNA contains the genetic information that allows all modern living things to
function, grow and reproduce. However, it is unclear how long in the 4-billion-
year history of life DNA has performed this function, as it has been proposed
that the earliest forms of life may have used RNA as their genetic
material. RNA may have acted as the central part of early cell metabolism as it
can both transmit genetic information and carry out catalysis as part
of ribozymes. This ancient RNA world where nucleic acid would have been
used for both catalysis and genetics may have influenced the evolution of the
current genetic code based on four nucleotide bases.
What do you Think?

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Dna

  • 2. Deoxyribonucleic Acid It is a nucleic acid containing the genetic instructions used in the development and functioning of all known living organisms (with the exception of RNA viruses). The DNA segments carrying this genetic information are called genes. Likewise, other DNA sequences have structural purposes, or are involved in regulating the use of this genetic information. Along with RNA and proteins, DNA is one of the three major macromolecules that are essential for all known forms of life.
  • 3. DNA consists of two long polymers of simple units called nucleotides, with backbones made of sugars and phosphate groups joined by ester bonds. These two strands run in opposite directions to each other and are therefore anti-parallel. Attached to each sugar is one of four types of molecules called nucleobases (informally, bases).
  • 4. DNA is a long polymer made from repeating units called nucleotides. As first discovered by James D. Watson and Francis Crick, the structure of DNA of all species comprises two helical chains each coiled round the same axis, and each with a pitch of 34 Ångströms (3.4 nanometres) and a radius of 10 Ångströms (1.0 nanometres). According to another study, when measured in a particular solution, the DNA chain measured 22 to 26 Ångströms wide (2.2 to 2.6 nanometres), and one nucleotide unit measured 3.3 Å (0.33 nm) long.
  • 5. The DNA double helix is stabilized primarily by two forces: hydrogen bonds between nucleotides and base- stacking interactions among the aromatic nucleobases. In the aqueous environment of the cell, the conjugated π bonds of nucleotide bases align perpendicular to the axis of the DNA molecule, minimizing their interaction with the solvation shell and therefore, the Gibbs free energy. The four bases found in DNA are adenine (abbreviated A), cytosine (C), guanine (G) and thymine (T). These four bases are attached to the sugar/phosphate to form the complete nucleotide, as shown for adenosine monophosphate.
  • 6. Nucleobases The nucleobases are classified into two types: the purines, A and G, being fused five- and six- membered heterocyclic compounds, and the pyrimidines, the six-membered rings C and T. A fifth pyrimidine nucleobase, uracil (U), usually takes the place of thymine in RNA and differs from thymine by lacking a methyl group on its ring. Uracil is not usually found in DNA, occurring only as a breakdown product of cytosine. In addition to RNA and DNA a large numbe of artificial nucleic acid analogues have also been created to study the proprieties of nucleic acids, or for use in biotechnology.
  • 7. Grooves Twin helical strands form the DNA backbone. Another double helix may be found by tracing the spaces, or grooves, between the strands. These voids are adjacent to the base pairs and may provide a binding site. As the strands are not directly opposite each other, the grooves are unequally sized. One groove, the major groove, is 22 Å wide and the other, the minor groove, is 12 Å wide.
  • 8. Alternate DNA structures From left to right, the structures of A, B and Z DNA
  • 9. DNA exists in many possible conformations that include A-DNA, B-DNA, and Z-DNA forms, although, only B-DNA and Z-DNA have been directly observed in functional organisms.The conformation that DNA adopts depends on the hydration level, DNA sequence, the amount and direction of supercoiling, chemical modifications of the bases, the type and concentration of metal ions, as well as the presence of polyamines in solution.
  • 10. Quadruplex structures At the ends of the linear chromosomes are specialized regions of DNA called telomeres. The main function of these regions is to allow the cell to replicate chromosome ends using the enzyme telomerase, as the enzymes that normally replicate DNA cannot copy the extreme 3′ ends of chromosomes.These specialized chromosome caps also help protect the DNA ends, and stop the DNA repair systems in the cell from treating them as damage to be corrected.
  • 11. Evolution DNA contains the genetic information that allows all modern living things to function, grow and reproduce. However, it is unclear how long in the 4-billion- year history of life DNA has performed this function, as it has been proposed that the earliest forms of life may have used RNA as their genetic material. RNA may have acted as the central part of early cell metabolism as it can both transmit genetic information and carry out catalysis as part of ribozymes. This ancient RNA world where nucleic acid would have been used for both catalysis and genetics may have influenced the evolution of the current genetic code based on four nucleotide bases.
  • 12. What do you Think?