Bruno Progress Report

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Presentation given by Bruno Danis (SCAR-MarBIN) on the progress made during year 2009.

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Bruno Progress Report

  1. 1. SCAR-MarBIN.be Progress Report - workshop 09 Held at the British Antarctic Survey, hosted by Katrin Linse & Huw Griffiths
  2. 2. Background
  3. 3. SCAR-MarBIN Marine Biodiversity Information Network • Funding: Belgian science Policy office • International Polar Year 2007/08 • Census of Antarctic Marine Life • Ocean Biogeographic Information System • Global Biodiversity Information Network • Encyclopedia of Life
  4. 4. Philosophy • Build a network • Offer free and open access to data and technology • Expose all the (biodiversity) data and metadata • Remain community-driven • Adopt strong standardization • Work for science, conservation, management Riddle, M. Australian Antarctic Division
  5. 5. What sort of data? • Primary Biodiversity data • Taxonomy and Systematics • Occurence/abundance data • Genetic data • DwC
  6. 6. Present situation • BAD NEWS: • BELSPO Funding Ended • No developper • GOOD NEWS: • International contributions • New project to keep MarBIN alive
  7. 7. Results
  8. 8. Tangible results • The first RAMS • Board of 60 editors • Feeds WoRMS, CoL and EoL • 16,224 taxa • 9,253 species • 8,211 valid species • 10,605 checked taxa (65%)
  9. 9. Tangible results all taxa all species valid species 0 3.750 7.500 11.250 15.000 Acanthocephala Annelida Arthropoda Brachiopoda Bryozoa Cephalorhyncha Chaetognatha Chordata Cnidaria Ctenophora Echinodermata Echiura Hemichordata Mesozoa Mollusca Myxozoa Nematoda Nemertina Platyhelminthes Porifera Rotifera Sipuncula Tardigrada
  10. 10. Tangible results all taxa all species valid species 0 500 1.000 1.500 2.000 Biliphyta Viridaeplantae Protoctista Stramenopila Monera Chromista
  11. 11. Tangible results 1,031,732 records 138 datasets over 5,200 taxa Downloadable WebGIS Webservices OGC +RESTish
  12. 12. Synthesizing knowledge • RAMS: information on 16,000 taxa • ANTOBIS: 1,000,000+ records • Polar Macroscope Synthesis team • Injection into conservation processes • New insights in biogeography • New insights in ecological processes
  13. 13. Meetings attended • e-Biosphere 09 • OBIS MC 09 • GBIF GB 09 • WCMC 09 • Diversitas 09 • SCAR-OSC 09
  14. 14. Funding • BELSPO: down, funding new project • SCAR: 5 kUSD per year • CAML: 20 kUSD one shot (for 2009-10) • AAD: 6k AUD (two years) • German Science Foundation: 5 kEUR (two years) • Dutch Science Foundation: 5 kUSD (one year) • AWI: 7 kEUR (two years) • ArcOD: 3 kUSD one shot • TOTAL Foundation: 260 kEUR one shot
  15. 15. Applications
  16. 16. Identifying gaps Griffiths HJ, British Antarctic Survey
  17. 17. All
Species
  18. 18. Identifying gaps Over 50% of samples taken in waters shallower than 400m Similar trend for recorded benthic species Most of the Southern Ocean is abyssal Griffiths HJ, Clarke A, Danis B, submitted
  19. 19. Identifying gaps 2,8 isopod species are descibed every year De Broyer C & Danis B, submitted 600+ were discovered during ANDEEP We will need 214 years to describe them!
  20. 20. Webportal V2.0
  21. 21. SCAR-MarBIN V2 •Main goals • Better, faster, simpler • Improve usability • Improve interoperability • Improve dissemination and visibility • Extend functionalities
  22. 22. Systems comparison V1 V2 Languages PHP4 (procedural part OOish) Java, Groovy (100% OO) Design patterns - MVC-ORM-AOP-IoC… Framework - (100% homebrew) Grails (Spring, Hibernate),YUI Template engine - SiteMesh Search engine SQL-based Full text (SOLR-lucene) DB SQL server SQL server - PostGresql GIS server mapserver Geoserver Spatial DB - PostGIS Mapping client chameleon openLayers Web services SOAP (RAMS) RESTish (all resources) OS Windows server FreeBSD Open source Partly 100% (minus legacy DB)
  23. 23. I know you love stats
  24. 24. 0 3.000 6.000 sept-05 déc-05 mars-06 juin-06 sept-06 déc-06 mars-07 juin-07 sept-07 déc-07 Unique visitors mars-08 juin-08 sept-08 Portal useage déc-08 mars-09 juin-09 sept-09
  25. 25. 0 10.000 20.000 sept-05 déc-05 mars-06 juin-06 sept-06 déc-06 mars-07 juin-07 sept-07 déc-07 bandwidth mars-08 juin-08 sept-08 Portal useage déc-08 mars-09 juin-09 sept-09
  26. 26. 0 2.000 4.000 sept-05 déc-05 mars-06 juin-06 sept-06 déc-06 mars-07 juin-07 sept-07 déc-07 bandwidth mars-08 juin-08 sept-08 Portal useage déc-08 mars-09 juin-09 sept-09
  27. 27. Unknown Belgium Network 2007 connections origin (hits) Commercial Germany Poland Italy Spain Unknown France Brazil 1%0% 0% 1% 0% 1%1% 1%1% 1%1% United Kingdom 1% 2% 2% Canada 2% 30% Australia 8% Russian Federation 2% USA Educational 3% Non-Profit Organizations 2% 4% Netherlands 16% Japan 8% Argentina 11% Moldova Chile Portugal Greece Ukraine
  28. 28. Unknown Commercial Belgium 2008 connections origin (hits) Network France Poland Germany United Kingdom Russian Federation Canada Brazil 3%1%0% 1% 1%0% 0% 1%0% 1%0% 0% Spain 1% 1% Unknown 1% 2% 2% USA Educational 2% 4% 41% Italy Australia 7% Netherlands Japan 8% Singapore Latvia 20% Chile Argentina New Zealand Non-Profit Organizations China
  29. 29. Unknown Commercial United Kingdom 2009 connections origin (hits) Network Belgium Germany Poland Brazil Russian Federation Italy Spain 1%1%0% 0% 0% 1%1% 0% 0% 1%0% Canada 1%0% 2% 1% 2% USA Educational 2% 2% France 5% Singapore 45% 7% Australia Argentina 5% Bahamas Japan 21% Israel Ukraine New Zealand Denmark Netherlands China
  30. 30. Distribution data providers datasets records % of datamass Argentina 2 374 0,036249724 Australia Belgium 29 8 740243 10804 71,747605 1,047171165 16 countries France Germany 2 2 4293 7598 0,416096428 0,736431554 providing data International 3 71236 6,904506209 Italy 2 683 0,066199362 Japan 1 19 0,001841564 New-Zealand 1 47865 4,639286171 Norway 2 69 0,006687783 Poland 1 87 0,008432422 Russia 1 2504 0,242698685 Spain 1 25 0,00242311 Ukraine 1 592 0,057379242 United Kingdom 5 48797 4,729619707 USA 11 96543 9,357371876 TOTAL 72 1114108 100
  31. 31. Metadata providers metadata records %metadata Australia Belgium 36 14 26,08695652 10,14492754 22 countries Poland BoL 13 12 9,420289855 8,695652174 providing United Kingdom International 11 9 7,971014493 6,52173913 metadata USA 9 6,52173913 Germany 7 5,072463768 France 6 4,347826087 Argentina 3 2,173913043 Spain 3 2,173913043 Brazil 2 1,449275362 Italy 2 1,449275362 Norway 2 1,449275362 Russia 2 1,449275362 Austria 1 0,724637681 Denmark 1 0,724637681 Ireland 1 0,724637681 Japan 1 0,724637681 Netherlands 1 0,724637681 New Zealand 1 0,724637681 Ukraine 1 0,724637681 TOTAL 138
  32. 32. In the pipeline
  33. 33. Projects • TOTAL Foundation: minigrants and cybertaxonomy • AFG • Barcoding • PMS • ABBED • ARCOD
  34. 34. Total minigrants: Inventory of the Southern Ocean biodiversity • A database of living Antarctic benthic Foraminifera (Protista) for SCAR-MarBIN RAMS (Prof. A.J. Gooday, National Oceanography Centre, Southampton, UK). (in progress). • Databasing Antarctica marine Bioconstructors: Adding Large Sessile Habitat-forming Animals to SCAR-MarBIN (Dr H. Griffiths, British Antarctic Survey, Cambridge. UK). (in progress). • SCAR-MarBIN database of Ostracoda Myocopida and Podocopida (Dr S. Brandao, Zoologisches Museum, Universitat Hamburg, Germany). (in prep.). • Cumacea (Crustacea: Peracarida) of the Southern Ocean (Dr U. Muhlenhardt-Siegel, Biozentrum Grindel und Zoologisches Museum, Universitat Hamburg, Germany). (done). • Synopsis of the Amphipoda Hyperiidea of the Southern Ocean, with distribution and ecological data (Dr W. Zeidler, South Australian Museum, Adelaide, Australia). (done). • Building a biogeographic baseline of obligate Antarctic benthic brooders: isopods for the Southern Ocean Mollusc database (SOMBASE) and SCAR-MarBIN (Dr S. Kaiser, Zoologisches Museum, Universitat Hamburg, Germany). (in progress).
  35. 35. Total minigrants: Inventory of the Southern Ocean biodiversity • Biogeographic distribution of the Antarctic and Sub-Antarctic brachiopods (living forms) (Dr C. Emig, Marseille, France). (in progress). • Systematics and distribution of echinoids collected during Australian cruises in East Antarctica (Dr T. Saucede, Universite de Bourgogne, Dijon, France). (in progress). • Biodiversity of Antarctic and Sub-Antarctic Crinoids (Dr M. Eleaume, Musee National d’Histoire Naturelle, Paris, France). (in prep.). • Biogeographic database of Antarctic and sub-Antarctic Polychaetes (Dr A. Glover, Natural History Museum, London, UK). (in prep.). • Contribution to the SCAR-MarBIN Molluscs database (Dr M. Schrodl, Zoologisches Staatsammlung Munchen, Germany). (in prep.). • Various general contributions to the SCAR-MarBIN RAMS and ANTOBIS (Henri Robert, Laboratory of Carcinology, Institut Royal des Sciences Naturelles de Belgique, BELGIUM.: Output: occurrence and taxonomic data (various groups), contributions to literature database, to expeditions database, to biogeographic synthesis).
  36. 36. Upcoming technologies
  37. 37. ANTABIF • New project: Antarctic Biodiversity Information Facility • Funding: BELSPO (two years) • Objective: build (fast) a new portal giving access on all available information on Antarctic biodiversity • www.biodiversity.aq • Close collaboration with AAD/EBA/SCADM
  38. 38. Thanks!!
  39. 39. 2008 ToDos • see review

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