ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID
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ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID

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ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID Presentation Transcript

  • G. A. Thorisson, University of Leicester http://www.orcid.org The digital scholar, identity on the Web and ORCID Gudmundur A. Thorisson <gt50@le.ac.uk> Tony Brookes bioinformatics group Departments of Genetics University of Leicester -- Outline -- • How did I get sucked into this stuff? • Ongoing/planned genetic researcher data pub. projects w/ ORCID component • How might ORCID fit into the broader online identity landscape? This work can be freely copied, redistributed and adapted, as long as proper attribution is given ORCID Participant Meeting, Harvard 18 May 2011 1Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Prologue ORCID Participant Meeting, Harvard 18 May 2011 2Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 3Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Prof Anthony J Brookes GEN2PHEN coordinator Chair, Bioinformatics and Genomics Department of Genetics University of Leicester, UK ORCID Participant Meeting, Harvard 18 May 2011 4Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 5Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org The data sharing problem ORCID Participant Meeting, Harvard 18 May 2011 6Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Lack of incentives for sharing • Effort required to prepare, package and submit datasets to public repositories • Time better spent writing papers & grants • All sticks (funders, journals) - no carrots • Need incentives - treat data as publications, credit creators “[...] Many of the issues regarding data availability can be addressed if the principles of “publication” rather than “sharing” are applied. However, online data publication systems also need to develop mechanisms for data citation and indices of data access comparable to those for citation systems in print journals” Costello, M. Motivating Online Publication of Data. BioScience (2009) vol. 59 (5) pp. 418-427 ORCID Participant Meeting, Harvard 18 May 2011 7Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Name ambiguity => attribution challenges ? ORCID ORCID ID: B-1242-2010 F67572010 G. Thorisson, Univ. Leicester G. A. Thorisson, Univ. Leicester G. A. Thorisson, Cold Spring Harbor Lab. ORCID ID: G-1442-2009 J. Smith, Univ. North Pole ORCID ID: D-2400-2010 J. Smith, Luthor Corporation ORCID Participant Meeting, Harvard 18 May 2011Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Projects ORCID Participant Meeting, Harvard 18 May 2011 9Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Cafe Variome - facilitating exchange of genetic data 1. Diagnostic 2. Central 3. End-users (e.g. laboratories ‘clearinghouse’ LSDB curators) Publish data Retrieve Atom feeds Submi&ng  muta,ons  from   diagnos,c  labs  using  “Café   Data  are  shared  with  diverse   RouGE  enabled”  so<ware  via   3rd  par,es  via  manual   simple  bu@on  click retrieval  or  automated  feed-­‐ based  monitoring/retrieval ORCID Participant Meeting, Harvard 18 May 2011 10 10Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Cafe Variome - facilitating exchange of genetic data Data  shared    with  diverse  3rd  par,es  and   data  usage/cita,on  tracked  via  DOI Submission  from  diag.  lab ✔ DOI  assigned  to  incoming   data  upload dbSNP  (coding) UniProt PhenCode Already  stable  IDs  so  no  DOI  assigned A@ribu,on  given  to  data  submi@ers via  ORCID  unique  iden,fier Metadata  describing  varia,on   data  published  elsewhere ORCID Participant Meeting, Harvard 18 May 2011 11Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Cafe Variome - facilitating exchange of genetic data Data  shared    with  diverse  3rd  par,es  and   data  usage/cita,on  tracked  via  DOI Submission  from  diag.  lab ✔ DOI  assigned  to  incoming   data  upload dbSNP  (coding) UniProt PhenCode Already  stable  IDs  so  no  DOI  assigned A@ribu,on  given  to  data  submi@ers via  ORCID  unique  iden,fier Metadata  describing  varia,on   data  published  elsewhere ORCID Participant Meeting, Harvard 18 May 2011 11Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Publication credit for Cafe Variome deposits 4x variants in BRCA2 gene in patient XG. Thorisson, Univ. Leicester gthorisson@gmail.comORCID ID: A-883-2010 CV user has linked his user account with his ORCID profile ORCID Participant Meeting, Harvard 18 May 2011Wednesday, 18 May 2011 12
  • G. A. Thorisson, University of Leicester http://www.orcid.org Publication credit for Cafe Variome deposits 4x variants in BRCA2 gene in patient XG. Thorisson, Univ. Leicester gthorisson@gmail.comORCID ID: A-883-2010 CV user has linked his user account with his ORCID profile G. A. Thorisson (A-883-2010). 4x variants in BRCA2 gene. Published online via Cafe Variome. 21 January (2011) doi:10.1255/caferouge.BRCA2-2352354 => http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354 ORCID Participant Meeting, Harvard 18 May 2011Wednesday, 18 May 2011 12
  • G. A. Thorisson, University of Leicester http://www.orcid.org GWAS nanopublications • Foray into semantic publishing – GWAS Central as ‘nano-publisher’ – variant<->disease assertion as nanopub rs19243 <associatedWith> Type II diabetes + condition & provenance • Provenance part to include: – Contributors IDs – Contributor roles: • Author(s) on original GWAS paper • Curator • Registrant • Citability: register DOI for nanopub? ORCID Participant Meeting, Harvard 18 May 2011 13Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID collaborative development ORCID Participant Meeting, Harvard 18 May 2011 14Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID collaborative development ORCID Participant Meeting, Harvard 18 May 2011 14Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Online identity and attribution ORCID Participant Meeting, Harvard 18 May 2011 15Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Key ORCID use case: submitting manuscript to journal Attribution link deposited into ORCID: A-883-2010 <created> 10.4259/psycho-review.gbilder2010.Foobar Bilder, G. Foobar (A-883-2010) study of cracked pots in Uruguy. Psychoceramics Review. Published online May 23 2010. doi:10.4259/psycho-review.gbilder2010.Foobar ORCID Participant Meeting, Harvard 18 May 2011Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org • But, there’s lots more ways of contributing to science • I want be acknowledged for .... ORCID Participant Meeting, Harvard 18 May 2011 17Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ... my data publications in Dryad and other public repos ORCID Participant Meeting, Harvard 18 May 2011 18Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org .. my nanopublications $%%&()*" !" +" #" ORCID Participant Meeting, Harvard 18 May 2011 19Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org .. my nanopublications $%%&()*" !" +" #" ORCID Participant Meeting, Harvard 18 May 2011 19Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ... my Taverna analytical workflows and other digital research objects published on myExperiment ORCID Participant Meeting, Harvard 18 May 2011 20Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ... my Wikipedia contributions ORCID Participant Meeting, Harvard 18 May 2011 21Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ... my contributions to open-source software projects ORCID Participant Meeting, Harvard 18 May 2011 22Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org • etc. etc. etc. • In short, ‘I wanna’ aggregate all those contributions and showcase me as a ‘digital scholar’ Challenge: Identity fragmentation ORCID Participant Meeting, Harvard 18 May 2011 23Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 24Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org How do I link all those different sub-identities together that matter to me professionally? ORCID Participant Meeting, Harvard 18 May 2011 25Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Technologically, this is not rocket science ORCID Participant Meeting, Harvard 18 May 2011 26Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Technologically, this is not rocket science ORCID Participant Meeting, Harvard 18 May 2011 26Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Single sign-on with social IDs ORCID Participant Meeting, Harvard 18 May 2011 27Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org What’s love ORCID gotta do with it? An online identity for the digital scholar, centred on contributor ID? ORCID Participant Meeting, Harvard 18 May 2011 29 28Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org What’s love ORCID gotta do with it? An online identity for the digital scholar, centred on contributor ID? ORCID ID: B-1242-2010 G. Thorisson, Univ. Leicester G. A. Thorisson, Univ. Leicester G. A. Thorisson, Cold Spring Harbor Lab. http://mummi.myopenid.com ORCID Participant Meeting, Harvard 18 May 2011 29 28Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org ORCID Participant Meeting, Harvard 18 May 2011 29Wednesday, 18 May 2011
  • G. A. Thorisson, University of Leicester http://www.orcid.org Acknowledgements GEN2PHEN Consortium This work has received funding from http://www.gen2phen.org/about-gen2phen/partners the European Communitys Seventh Framework Programme (FP7/2007-2013) under grant agreement number 200754 - the GEN2PHEN project. Anthony J. Brookes Bioinformatics Group Contact me! Gudmundur ‘Mummi’ Thorisson <gt50@le.ac.uk> |<gthorisson@gmail.com> http://friendfeed.com/mummi http://www.linkedin.com/in/mummi http://www.twitter.com/gthorisson ORCID Participant Meeting, Harvard 18 May 2011 30Wednesday, 18 May 2011