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SCALE FullMetalMongo
• Humongous: Slang. Extraordinary large;  expressive coinage, perhaps reflecting huge  and monstrous, with stress pattern o...
ProductionDeployments
Outline• Terminology and            • Schema design  basics                             • Indexes• The mongo shell        ...
Terminology and basics
Terminology• NoSQL is almost everything• Schemaless is nonesense : mongoDB do  have a schema • Flexible • But a schema
Scaling out scalespeed           NoSQL                       features
Format• BSON: Binary encoded serialization of  JSON documents• Characteristics • Lightweight: minimum overhead • Traversab...
JSON{    _id : ObjectId(xxxxx),    name : Full Metal Mongo,    date : Date(),    presenter: isra,    attendants : [       ...
Data schema            Database  Collection    Document{ user: 1, name: [] }
Collection• Flexible: no fixed structure • ALTER TABLE (implicit)• Created in the first insertion (same for  dbs)• Capped co...
Document• JSON document • _id (ObjectId)    • unique for the collection    • it can be a document itself • Fields: numeric...
SQL to Mongo mapping
MongoDB basics• Default port: 27017• Optional authentication• Data location: /data/db/• Modes • automatic replication • au...
Drivers• Officially supported • C, C++, Erlang, Haskell, Java,    Javascript, .NET, Perl, PHP, Python, Ruby,    Scala• Comm...
Connection• mongodb://username:password@host:port/  database?options • username and password are optional • port: 27017 by...
The mongo shell
Hands on:      let’s get started• Run a mongod (--fork) instance• Run a mongo shell (mongo) that connects  to this instance
The mongo shell:          basics• show dbs• use db_name• show collections (current db)• show users (current db)
InsertionSuppose a collection of GUL courses.         db.courses.insert ({           name : Full Metal Mongo,           da...
Querying//Full Metal Mongo coursedb.gul.find({name:Full Metal Mongo})//Courses attended by anadb.gul.find({attendants.name...
Querying II//Courses ordered by namedb.gul.find().sort({name:1});//The first 5 coursesdb.gul.find().limit(5);//Next five c...
Querying III//Courses attended by any under-agedb.gul.find({attendants.age:{$lt:18}});//Last year courses between Monday a...
Querying IV//Courses attended by pedro or anadb.gul.find({attendants.name:  {$in:[pedro, ana]}});//Courses attended by 10 ...
$ operators• $in / $nin              • $exists• $all (default is any)   • $regex• $gt(e) / $lt(e)         • $natural (orde...
More $ expressions• $sum      • $push (insert)• $avg      • $addToSet (insert)• $min      • $first (sort)• $max      • $las...
Update//updates if exits; inserts if newdb.gul.save(x)//update speakers in the crafty coursedb.gul.update(  {name:Crafty},...
Find and Modify• findAndModify (not widely used)
Remove//removes alldb.gul.remove()//search and removedb.gul.remove({presenter:isra})
Database references:     direct linking//Queryisra = db.gul_members.findOne()//Response from the query{_id: ObjectId(ad234...
Database references:         DBRef//Queryisra = db.gul_members.findOne()//Response{_id: ObjectId(ad234fea23482348),name:is...
Import              example data     • Download a short courses collection from      • http://www.it.uc3m.es/igrojas/mongo...
Hands on:             querying• Add a new course with data similar to the  existing• Update your course to add attendants•...
Aggregation    db.gul.aggregate([ pipeline ])•    Pipelines (7)                  •   $order (1:1)    •   $match (n:1)     ...
Aggregation I//Number of coursesdb.gul.count();//Number of courses given by isradb.gul.count({presenter:isra});//Distinct ...
Aggregation IIdb.grades.aggregate([  {$unwind:"$scores"},  {$match:{"scores.type":{$ne:"quiz"}}},  {$group:{    _id:{class...
Hands on:         aggregation• Distinct course speakers• Distinct tags and count• Number of courses per weekday
Map/Reduce• Batch processing of data and aggregation  operations• Where GROUP BY was used in SQL• Input from a collection ...
Map/reduce (II)• Courses attended per individualvar map = function(){  for(var i in this.attendants){    emit(this.attenda...
Map/reduce (III)• Courses attended per individual   var reduce = function(key, values){       var sum=0;       for (var i ...
Map/reduce (IV)• Courses attended per individual      db.gul.mapReduce({        map: map,        reduce: reduce,        {o...
Hands on:          map/reduce• Update the some courses to add  attendants• Get all the courses attended by individual• Dis...
Schema design
Schema Design• Function of the data and the use case• Decisions • # of collections • Embedding or linking • Indexes • Shar...
Relationships• Types • 1:1(person:resume) • 1:n (city:person, post:comments) • m:n (teacher:student)• Doc limit: 16MB• Exa...
Transactions• No transactions • Redesign schema • Implement in SW • Tolerate no transactions
Schema design:         examples• Let’s design the schema for • courses • school • blog / twitter • foursquare
Indexes
Indexes• Objective: Query optimization• Used in the query itself and/or the ordering• B-Tree indexes• _id index is automat...
Indexes (II)• For arrays, the index is multikey (one  index entry per array element)• Field names are not in indexes//Comp...
Indexes types• default• unique   db.gul.ensureIndex({name:1}, {unique:1})• sparse   db.gul.ensureIndex({name:1}, {sparse:1...
Indexes options• dropDups: drop duplicate keys when  creating the index (converted in unique)• background: created in the ...
More about Indexes• Covered index • query covered completely by the index• Selectivity of an index• Explain   db.gul.find(...
Geospatial indexes• 2d-only• compound indexes may be used  db.places.ensureIndex({loc:2d})  db.places.find({loc:{    $near...
Creating indexes:       examples• Optimize our courses database • Think of common queries • Implement the convenient indexes
DBAs stuff
Backups• mongodump / mongorestore• copy files using your own software  (journaling enabled required)• replica sets: backup ...
Commandsdb.gul.runCommand(compact)db.runCommand({compact:gul})//Run a script from the command linemongo < path/to/script.js
Profiler• Log queries / commands  mongod --profile 0/1/2 --slowms 100  //0: no  //1: slow queries  //2: all queries  //slow...
Profiler (II)• From the mongo shell  db.getProfilingLevel() // 0-1-2  db.getProfilingStatus() // { "was" : 0,  "slowms" : 1...
Kill operations• db.currentOp() • in progress operations• db.killOp(op_id)• Don’t kill • write ops in secondaries • compac...
Commands for dbas• mongotop • time of activity per collection • info about total, read, write, etc.• mongostat (command li...
Security tips
Security• mongod/mongos --auth //not from  localhost• Add user • use admin • db.addUser(user, passwd, [readOnly])• Auth • ...
Types of users• admin • created in the admin db • access to all dbs• regular • access a specific db • read/write or readOnly
Intra-cluster security• For replica sets, to use non-auth (faster)  communications among the nodes• mongod --keyFile file -...
Replica sets
What is a replica set?• Info replicated among several nodes• 1 primary• n secondaries (min 3, to get a majority)• When a n...
Types of nodes in a       replica set• Regular• Arbiter: decides the primary in a election• Delayed: cannot be elected pri...
Replica set      configurationrs.config({ _id: rs_name,  members: [{_id:0, host:host0}, {_id:1,host: host1}, {_id:2, host: ...
Write concern• Journal: list of operations (inserts, updates)  done, saved in disk (permanent)• getLastError (managed by t...
Oplog and write         concern• oplog.rs: capped collection with the  operations made in the replica set, stored  in natu...
Sharding
What is sharding?• Scalability• Horizontal partitioning of a database• A BSON document stored in ONE shard• Shard key • No...
What is sharding?• Auto balancing• Easy addition of new machines• Up to 1k nodes• No single point of failure• Automatic fa...
Sharding config• Need of config servers • store metadata about chunks • mongod --configsvr• Need mongod “routers” • mongos (a...
Sharding operations• chunk: range of the sharding key being in a  shard• operations • split: dividing a chunk to balance t...
Sharding diagram via: http://www.cloudifysource.org/2012/03/25/petclinic_deepdive.html
Shard key            selection• Examples: choose the shard key for • courses • school • blog / twitter • foursquare
References• MongoDB devel docs: http://  www.mongodb.org/display/DOCS/  Developer+Zone• MongoDB FAQ: http://www.mongodb.or...
References• Kyle Banker’s blog: • Aggregation: http://kylebanker.com/blog/    2009/11/mongodb-count-group/ • e-Commerce ex...
Thank you very much!   Any questions?
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Full metal mongo

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Full metal mongo course at GUL uc3m

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Transcript of "Full metal mongo"

  1. 1. SCALE FullMetalMongo
  2. 2. • Humongous: Slang. Extraordinary large; expressive coinage, perhaps reflecting huge and monstrous, with stress pattern of tremendous• Open source NoSQL database • Written in C++ • https://github.com/mongodb/mongo
  3. 3. ProductionDeployments
  4. 4. Outline• Terminology and • Schema design basics • Indexes• The mongo shell • DBA stuff• Insert / update / delete • Security• Querying • Replica sets• Aggregation • Sharding• Map/reduce
  5. 5. Terminology and basics
  6. 6. Terminology• NoSQL is almost everything• Schemaless is nonesense : mongoDB do have a schema • Flexible • But a schema
  7. 7. Scaling out scalespeed NoSQL features
  8. 8. Format• BSON: Binary encoded serialization of JSON documents• Characteristics • Lightweight: minimum overhead • Traversable • Efficient: encoding and decoding
  9. 9. JSON{ _id : ObjectId(xxxxx), name : Full Metal Mongo, date : Date(), presenter: isra, attendants : [ {name:ana, age:23}, {name:luis, age: 32} ]} //default _id: 24 hex chars
  10. 10. Data schema Database Collection Document{ user: 1, name: [] }
  11. 11. Collection• Flexible: no fixed structure • ALTER TABLE (implicit)• Created in the first insertion (same for dbs)• Capped collection: maintain insert order, fixed size
  12. 12. Document• JSON document • _id (ObjectId) • unique for the collection • it can be a document itself • Fields: numeric, string, date • Arrays and subdocuments
  13. 13. SQL to Mongo mapping
  14. 14. MongoDB basics• Default port: 27017• Optional authentication• Data location: /data/db/• Modes • automatic replication • automatic fail-over
  15. 15. Drivers• Officially supported • C, C++, Erlang, Haskell, Java, Javascript, .NET, Perl, PHP, Python, Ruby, Scala• Community supported • ActionScript, C#, Delphi, etc.• http://api.mongodb.org/
  16. 16. Connection• mongodb://username:password@host:port/ database?options • username and password are optional • port: 27017 by default • database: admin database by default • options: ‘name=value’ pairs
  17. 17. The mongo shell
  18. 18. Hands on: let’s get started• Run a mongod (--fork) instance• Run a mongo shell (mongo) that connects to this instance
  19. 19. The mongo shell: basics• show dbs• use db_name• show collections (current db)• show users (current db)
  20. 20. InsertionSuppose a collection of GUL courses. db.courses.insert ({ name : Full Metal Mongo, date : new Date(), presenter: isra, attendants : [ {name: ana, age: 23}, {name: luis, age: 32} ] }
  21. 21. Querying//Full Metal Mongo coursedb.gul.find({name:Full Metal Mongo})//Courses attended by anadb.gul.find({attendants.name:ana})//Course names given by isradb.gul.find({presenter:isra}, {name:1})
  22. 22. Querying II//Courses ordered by namedb.gul.find().sort({name:1});//The first 5 coursesdb.gul.find().limit(5);//Next five coursesdb.gul.find().skip(5).limit(5);//First course (natural order)db.gul.findOne()
  23. 23. Querying III//Courses attended by any under-agedb.gul.find({attendants.age:{$lt:18}});//Last year courses between Monday and Thursdaydb.gul.find({date:{ $gt:new Date(2012,03,08), $lt:new Date(2012,03,11)}});
  24. 24. Querying IV//Courses attended by pedro or anadb.gul.find({attendants.name: {$in:[pedro, ana]}});//Courses attended by 10 peopledb.gul.find({attendants: {$size:10}});
  25. 25. $ operators• $in / $nin • $exists• $all (default is any) • $regex• $gt(e) / $lt(e) • $natural (order)• $ne • $toLower / $toUpper• $elemMatch (conditions in the same subdoc)
  26. 26. More $ expressions• $sum • $push (insert)• $avg • $addToSet (insert)• $min • $first (sort)• $max • $last (sort)
  27. 27. Update//updates if exits; inserts if newdb.gul.save(x)//update speakers in the crafty coursedb.gul.update( {name:Crafty}, {$set:{presenter:[javi,isra]}});//new attendant to a course (not multi)db.gul.update( {name:mongoDB}, {attendants: {$push:{name:pepe, age:19}} });
  28. 28. Find and Modify• findAndModify (not widely used)
  29. 29. Remove//removes alldb.gul.remove()//search and removedb.gul.remove({presenter:isra})
  30. 30. Database references: direct linking//Queryisra = db.gul_members.findOne()//Response from the query{_id: ObjectId(ad234fea23482348),name:isra, age:31, languages:js}//Find by iddb.gul.find({attendants._id:isra._id})
  31. 31. Database references: DBRef//Queryisra = db.gul_members.findOne()//Response{_id: ObjectId(ad234fea23482348),name:isra, age:31, languages:js}//Insert by DBRefdb.gul.insert({ name: mongoDB, presenter: new DBRef(gul_members,isra._id)})
  32. 32. Import example data • Download a short courses collection from • http://www.it.uc3m.es/igrojas/mongo/ initDB.json//Import dataset in JSONmongoimport --db gul --collection courses initDB.json
  33. 33. Hands on: querying• Add a new course with data similar to the existing• Update your course to add attendants• Query courses with speaker “Jesús Espino”• Query course on Friday• Query courses tagged as “android”
  34. 34. Aggregation db.gul.aggregate([ pipeline ])• Pipelines (7) • $order (1:1) • $match (n:1) • $limit (n:1) • $project (1:1) • $skip (n:1) • $group (n:1) • $unwind (1:n) Examples: http://docs.mongodb.org/manual/reference/ sql-aggregation-comparison/
  35. 35. Aggregation I//Number of coursesdb.gul.count();//Number of courses given by isradb.gul.count({presenter:isra});//Distinct attendants to all coursesdb.gul.distinct(attendants.name);
  36. 36. Aggregation IIdb.grades.aggregate([ {$unwind:"$scores"}, {$match:{"scores.type":{$ne:"quiz"}}}, {$group:{ _id:{class_id:"$class_id", student_id:"$student_id"}, score:{$avg:"$scores.score"}} }}, {$group:{ _id:{class_id:"$_id.class_id"}, score:{$avg:"$score"} }}, {$sort: {score:-1}}])
  37. 37. Hands on: aggregation• Distinct course speakers• Distinct tags and count• Number of courses per weekday
  38. 38. Map/Reduce• Batch processing of data and aggregation operations• Where GROUP BY was used in SQL• Input from a collection and output going to a collection
  39. 39. Map/reduce (II)• Courses attended per individualvar map = function(){ for(var i in this.attendants){ emit(this.attendants[i].name,1); }}
  40. 40. Map/reduce (III)• Courses attended per individual var reduce = function(key, values){ var sum=0; for (var i in values){ sum+=values[i]; } return sum; }
  41. 41. Map/reduce (IV)• Courses attended per individual db.gul.mapReduce({ map: map, reduce: reduce, {out: {inline:1}, query:{initial_query}} });
  42. 42. Hands on: map/reduce• Update the some courses to add attendants• Get all the courses attended by individual• Distinct tags and count
  43. 43. Schema design
  44. 44. Schema Design• Function of the data and the use case• Decisions • # of collections • Embedding or linking • Indexes • Sharding
  45. 45. Relationships• Types • 1:1(person:resume) • 1:n (city:person, post:comments) • m:n (teacher:student)• Doc limit: 16MB• Examples: school, blog
  46. 46. Transactions• No transactions • Redesign schema • Implement in SW • Tolerate no transactions
  47. 47. Schema design: examples• Let’s design the schema for • courses • school • blog / twitter • foursquare
  48. 48. Indexes
  49. 49. Indexes• Objective: Query optimization• Used in the query itself and/or the ordering• B-Tree indexes• _id index is automatic (unique) db.gul.ensureIndex({ name:1 }) db.gul.getIndexes() db.gul.stats() //Size of the index
  50. 50. Indexes (II)• For arrays, the index is multikey (one index entry per array element)• Field names are not in indexes//Compound indexesdb.gul.ensureIndex({ name:1, age:1})//For nested fields (subdocs)db.gul.ensureIndex({ attendants.name:1 })
  51. 51. Indexes types• default• unique db.gul.ensureIndex({name:1}, {unique:1})• sparse db.gul.ensureIndex({name:1}, {sparse:1})• TTL (time to live)• geospatial
  52. 52. Indexes options• dropDups: drop duplicate keys when creating the index (converted in unique)• background: created in the background on primary of the replica set, in the foreground on secondaries
  53. 53. More about Indexes• Covered index • query covered completely by the index• Selectivity of an index• Explain db.gul.find().explain()• Hints db.gul.find().hint({name:1})
  54. 54. Geospatial indexes• 2d-only• compound indexes may be used db.places.ensureIndex({loc:2d}) db.places.find({loc:{ $near:[20,40], $maxDistance:2} }).limit(50)
  55. 55. Creating indexes: examples• Optimize our courses database • Think of common queries • Implement the convenient indexes
  56. 56. DBAs stuff
  57. 57. Backups• mongodump / mongorestore• copy files using your own software (journaling enabled required)• replica sets: backup from secondary
  58. 58. Commandsdb.gul.runCommand(compact)db.runCommand({compact:gul})//Run a script from the command linemongo < path/to/script.js
  59. 59. Profiler• Log queries / commands mongod --profile 0/1/2 --slowms 100 //0: no //1: slow queries //2: all queries //slowms: threshold for type 1
  60. 60. Profiler (II)• From the mongo shell db.getProfilingLevel() // 0-1-2 db.getProfilingStatus() // { "was" : 0, "slowms" : 100 } db.setProfilingLevel(1,1000)• Data stored in system.profile collection
  61. 61. Kill operations• db.currentOp() • in progress operations• db.killOp(op_id)• Don’t kill • write ops in secondaries • compact • internal ops
  62. 62. Commands for dbas• mongotop • time of activity per collection • info about total, read, write, etc.• mongostat (command line) • every x seconds • info about insert, update, delete, getmore, command, flushes, mapped, vsize, res, faults, etc.
  63. 63. Security tips
  64. 64. Security• mongod/mongos --auth //not from localhost• Add user • use admin • db.addUser(user, passwd, [readOnly])• Auth • use admin• db.auth(user, passwd)
  65. 65. Types of users• admin • created in the admin db • access to all dbs• regular • access a specific db • read/write or readOnly
  66. 66. Intra-cluster security• For replica sets, to use non-auth (faster) communications among the nodes• mongod --keyFile file --replSet
  67. 67. Replica sets
  68. 68. What is a replica set?• Info replicated among several nodes• 1 primary• n secondaries (min 3, to get a majority)• When a node falls, there’s election and a majority is needed to select a new primary
  69. 69. Types of nodes in a replica set• Regular• Arbiter: decides the primary in a election• Delayed: cannot be elected primary• Hidden: used for analytics (not primary)
  70. 70. Replica set configurationrs.config({ _id: rs_name, members: [{_id:0, host:host0}, {_id:1,host: host1}, {_id:2, host: host2}]})rs.status()rs.slaveOk() //read form secondariesrs.isMaster() //check primary
  71. 71. Write concern• Journal: list of operations (inserts, updates) done, saved in disk (permanent)• getLastError (managed by the driver) • w: wait until write is saved in memory (the app receives ack) Used to detect errors, like violation of a unique. • j: wait until write is saved in the journal
  72. 72. Oplog and write concern• oplog.rs: capped collection with the operations made in the replica set, stored in natural order• write concern • w: n, means wait response of n nodes in a replica set • w: ‘majority’, wait for the majority of the nodes
  73. 73. Sharding
  74. 74. What is sharding?• Scalability• Horizontal partitioning of a database• A BSON document stored in ONE shard• Shard key • Not unique • No unique fields in the collection• Mongo offers auto-sharding
  75. 75. What is sharding?• Auto balancing• Easy addition of new machines• Up to 1k nodes• No single point of failure• Automatic failover• Select a convenient shard key
  76. 76. Sharding config• Need of config servers • store metadata about chunks • mongod --configsvr• Need mongod “routers” • mongos (accessed by the apps)
  77. 77. Sharding operations• chunk: range of the sharding key being in a shard• operations • split: dividing a chunk to balance the size of the chunks • migrate: moving a chunk from a shard to another
  78. 78. Sharding diagram via: http://www.cloudifysource.org/2012/03/25/petclinic_deepdive.html
  79. 79. Shard key selection• Examples: choose the shard key for • courses • school • blog / twitter • foursquare
  80. 80. References• MongoDB devel docs: http:// www.mongodb.org/display/DOCS/ Developer+Zone• MongoDB FAQ: http://www.mongodb.org/ display/DOCS/Developer+FAQ• MongoDB cookbook: http:// cookbook.mongodb.org/
  81. 81. References• Kyle Banker’s blog: • Aggregation: http://kylebanker.com/blog/ 2009/11/mongodb-count-group/ • e-Commerce example: http:// kylebanker.com/blog/2010/04/30/ mongodb-and-ecommerce/• mongodb MOOCs (dbas and developers) • http://education.10gen.com
  82. 82. Thank you very much! Any questions?
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