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Unit One Parts 3 & 4:
molecular bonding
Unit One
Parts      3&4
  H O   H3C Br           O         Br
                     H       CH3




Locating electrons
Describing bonds                   Pages
Shape of molecules                 34 & 43
Unit One
           3&4
                        if we know where




Parts
                      electrons are we can
                     predict reactions and
                     shape...they really are
                     key to understanding
                            chemistry




  H O   H3C Br           O                Br
                     H       CH3




Locating electrons
Describing bonds                        Pages
Shape of molecules                      34 & 43
Unit One
Parts      3&4
  H O   H3C Br              O             Br
                        H       CH3

                   as I’ve taken the
                 material out of order,
                  I’ll give you some

Locating electrons
                    page numbers



Describing bonds                          Pages
Shape of molecules                        35 & 45
what are bonds?
Na               Cl




    Na               Cl
           here we have an
         atom of sodium (Na)
            and an atom of




Ionic bonds
             chlorine (Cl)

                               Pg
                               34
if we take one
  electron from Na and
       give it to Cl...




           Na             Cl




         Na               Cl



Ionic bonds                    Pg
                               34
Na                      Cl




    Na+                     Cl-

           we get 2 charged species
          (cation = positive charge &
           anion = negative charge)




Ionic bonds                             Pg
                                        34
Na+      Cl-



           NaCl
                       opposite charges
                    attract and give us an
                          ionic bond



Ionic bonds                        Pg
                                   34
covalent bonds
         H               H




  if we bring 2 atoms
  together and they...




                             Pg
                             34
covalent bonds
                        H   H




      share their 2
  electrons we have a
     covalent bond              Pg
                                34
covalent bonds
         H   H
                 this is the bond we’ll be
                 dealing with most often
                  and is represented by
                       the black line



         H H




    2   electrons
        per bond
                                             Pg
                                             34
covalent bonds
         H   H




         H H
                 please remember




    2
                  that this line is
                    2 electrons

        electrons
        per bond
                                      Pg
                                      34
chemistry
 apain




            these are
              just
                extremes
reality is in the middle
where do we find
    electrons?
ONE DOES NOT SIMPLY
Aufbau Principle

 THIS IS THE LONG
VERSION...NOT THE
  VERSION I DO IN
   THE LECTURES




    lowest energy orbital
Aufbau Principle

                don’t worry about
               the name...just that
              electrons like to have
                  lowest energy
                    possible...




lowest energy orbital
rather like many
   students...
1                                                                                   18
         1
     H
     H                                                                                       He
             2                                                      13   14   15   16   17

         Li Be                                                      B    C    N    O    F    Ne

     Na Mg                                                          Al   Si   P    S    Cl   Ar
                  3   4    5     6    7    8    9    10   11   12

         K   Ca Sc Ti      V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                                                    1s1
energy




                 2s       2px        2py       2pz

                                                                hydrogen
                                                                                                  Pg
                                1s                                                                43
1                                                                                    18
         1
     H
     H                                                                                        He
             2                                                       13   14   15   16   17

         Li Be                                                       B    C    N    O    F    Ne

     Na Mg                                                           Al   Si   P    S    Cl   Ar
                  3   4    5     6    7    8    9     10   11   12

         K   Ca Sc Ti      V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                                                     1s1
energy




                 2s       2px        2py       2pz
                                                    just one electron

                                                                 hydrogen
                                                    so in first orbital


                                                                                                   Pg
                                1s                                                                 43
Pauli Exclusion Principle




     no two electrons
     are identical
1                                                                                   18
                                                                                             2
         H                                                                                   He
                                                                                             He
             2                                                      13   14   15   16   17

         Li Be                                                      B    C    N    O    F    Ne

     Na Mg                                                          Al   Si   P    S    Cl   Ar
                  3   4    5     6    7    8    9    10   11   12

         K   Ca Sc Ti      V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                                                    1s2
energy




                 2s       2px        2py       2pz

                                                                    helium
                                                                                                  Pg
                                1s                                                                43
1                                                                                   18
                                                                                             2
         H                                                                                   He
                                                                                             He
             2                                                      13   14   15   16   17

         Li Be                                                      B    C    N    O    F    Ne

     Na Mg                                                          Al   Si   P    S    Cl   Ar
                  3   4    5     6    7    8    9    10   11   12

         K   Ca Sc Ti      V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                                                    1s2
energy




                 2s       2px        2py       2pz
                                           one electron has spin
                                           +½ (up) and the other
                                             spin –½ (down)
                                                                    helium
                                                                                                  Pg
                                1s                                                                43
1                                                                                   18
                                                                                             2
         H                                                                                   He
                                                                                             He
             2                                                      13   14   15   16   17

         Li Be                                                      B    C    N    O    F    Ne

     Na Mg                                                          Al   Si   P    S    Cl   Ar
                  3   4    5     6    7    8    9    10   11   12

         K   Ca Sc Ti      V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                                                    1s2
energy




                 2s       2px        2py       2pz                            doesn’t matter what it
                                                                              means...just remember

                                                                    helium
                                                                              an electron can only be
                                                                                    up or down


                                                                                                  Pg
                                1s                                                                43
1                                                                                   18
                                                                                             2
         H                                                                                   He
                                                                                             He
             2                                                      13   14   15   16   17

         Li Be                                                      B    C    N    O    F    Ne

     Na Mg                                                          Al   Si   P    S    Cl   Ar
                  3   4    5     6    7    8    9    10   11   12

         K   Ca Sc Ti      V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                                                    1s2
energy




                 2s       2px        2py       2pz
                                                 so can only ever
                                                have two electrons
                                                    per orbital     helium
                                                                                                  Pg
                                1s                                                                43
1                                                                                          18

H                                                                                          He
             2                                                    13   14   15   16   17
3
Li Be                                                             B    C    N    O    F    Ne
Li
Na Mg                                                             Al   Si   P    S    Cl   Ar
                 3    4    5    6    7     8   9   10   11   12

K       Ca Sc Ti           V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                     2px       2py       2pz


                                                         1s22s1
    energy




                               2s
                                                                  lithium
                                                                                                Pg
                               1s                                                               43
1                                                                                            18

H                                                                                            He
             2                                                     13    14   15   16   17
3
Li Be                                                              B     C    N    O    F    Ne
Li
Na Mg                                                              Al    Si   P    S    Cl   Ar
                 3    4    5    6    7     8    9   10   11   12

K       Ca Sc Ti           V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                     2px       2py       2pz


                                                          1s22s1
    energy




                                             lithium obeys both
                                          rules...fill lowest orbital
                               2s         first (until full) then fill
                                                 next lowest)
                                                                    lithium
                                                                                                  Pg
                               1s                                                                 43
1                                                                                        18

H                                                                                        He
             2                                                    13   14 15 16one more
                                                                        ...adding 17
         4                                                              electron is easy...
Li Be
   Be                                                             B    C N O F Ne

Na Mg                                                             Al   Si   P   S   Cl   Ar
                 3    4    5    6    7     8   9   10   11   12

K       Ca Sc Ti           V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                     2px       2py       2pz


                                                         1s22s2
    energy




                               2s
                                                                  beryllium
                                                                                              Pg
                               1s                                                             43
1                                                                                          18

H                                                                                          He
             2                                                    13   14   15   16   17
                                                                  5
Li Be                                                             B
                                                                  B    C    N    O    F    Ne

Na Mg            ...and another...                                Al   Si   P    S    Cl   Ar
                 3    4    5    6    7     8   9   10   11   12

K       Ca Sc Ti           V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                     2px       2py       2pz


                                               1s22s22p1
    energy




                               2s
                                                                  boron
                                                                                                Pg
                               1s                                                               43
1                                                                                18

H                                                                                He
             2                                          13   14   15   16   17
                                                        5
Li Be                                                   B
                                                        B    C    N    O    F    Ne

Na Mg                                       it could go in any of
                                                            Al Si P S Cl Ar
                 3    4    5    6   7  8  9 10 x,11 y12 2pz,
                                               2p 2p or
                                           they’re identical...well
K       Ca Sc Ti           V    Cr Mn Fe Co Ni Cu Zn they are As Se Br Kr
                                           energetically Ga Ge




                     2px       2py   2pz


                                           1s22s22p1
    energy




                               2s
                                                       boron
                                                                                      Pg
                               1s                                                     43
1                                                              18

H                                                              He
             2                        13   14   15   16   17
                                      5
Li Be                                 B
                                      B    C    N    O    F    Ne
        but, where does
Na Mg the next (and most               Al Si P S Cl Ar
        3    4   5  6   7 8 9 10 11 12
       important as its
K Ca Sccarbon) go?? Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr
            Ti V Cr




                 2px   2py   2pz


                                   1s22s22p1
    energy




                       2s
                                      boron
                                                                    Pg
                       1s                                           43
Hund's rule




electrons as far apart as
       possible
(de ge n er a t e o rb i tals)
                    (as long as it doesn’t
                      violate any of the
                       previous rules!)
Hund's rule

                     makes sense as like
                      charges always
                          repel...




electrons as far apart as
       possible
(de ge n er a t e o rb i tals)
1                                                                                 18

     H                                                                                 He
         2                                                    13   14   15   16   17
                                                                   6
     Li Be                                                    B    C
                                                                   C    N    O    F    Ne

    Na Mg                                                     Al   Si   P    S    Cl   Ar
              3    4    5    6    7    8   9   10   11   12

     K   Ca Sc Ti       V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                           1s22s22p 12p 1
             2px       2py       2pz
                                                   x   y
energy




                       2s
                                               1s22s22p2
                                                  carbon
                                                                                            Pg
                       1s                                                                   43
1                                                                                 18

     H                                                                                 He
         2                                                    13   14   15   16   17
                                                                   6
     Li Be                                                    B    C
                                                                   C    N    O    F    Ne

    Na Mg                                                     Al   Si   P    S    Cl   Ar
              3    4    5    6    7    8   9   10   11   12

     K   Ca Sc Ti       V    Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




                                           1s22s22p 12p 1
             2px       2py       2pz            could be 2pz,
                                                  makes no
                                                   x   y
                                                 difference...
energy




                       2s
                                               1s22s22p2
                                                  carbon
                                                                                            Pg
                       1s                                                                   43
that's a lot of
   electrons...



                  luckily we don’t care
                    about all them...
all you have to
remember is...




           ©jaci XIII@flickr
1                                                                           18

H                                                                           He
    2                                              13   14   15   16   17
                                                        6
Li Be                                              B    C
                                                        C    N    O    F    Ne

Na Mg                                              Al   Si   P    S    Cl   Ar
        3   4   5   6   7   8   9   10   11   12

K   Ca Sc Ti    V   Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr




            1s22s22p2
                            carbon
    atomic = number of
    number   electrons                                                           Pg
                                                                                 45
Valence electrons
         1                                                                                  18

         H                                                                                  He
               2                                                   13   14   15   16   17
                                                                        6
         Li   Be                                                   B    C
                                                                        C    N    O    F    Ne

         Na Mg                                                     Al   Si   P    S    Cl   Ar
                    3     4    5   6   7   8   9    10   11   12

         K    Ca    Sc    Ti   V   Cr Mn Fe    Co   Ni   Cu   Zn Ga Ge       As   Se   Br   Kr




                                               1s22s22p 12p 1
              2px       2py    2pz
                                                       x   y
energy




                         2s                              1s22s22p2
                                                                   carbon
                                                                                                 Pg
                         1s
                                                                                                 43
Valence electrons
         1                                                                                  18

         H                                                                                  He
               2                                                   13   14   15   16   17
                                                                        6
         Li   Be                                                   B    C
                                                                        C    N    O    F    Ne

         Na Mg                                                     Al   Si   P    S    Cl   Ar
                    3     4    5   6   7   8   9    10   11   12

         K    Ca    Sc    Ti   V   Cr Mn Fe    Co   Ni   Cu   Zn Ga Ge       As   Se   Br   Kr



                                            only need consider high
                                           energy electrons or those
                                           on the outside called the


                                               1s22s22p 12p 1
              2px       2py    2pz            valence electrons.

                                                       x   y
energy




                         2s                              1s22s22p2
                                                                   carbon
                                                                                                 Pg
                         1s
                                                                                                 44
C                          C
                       if we consider the Bohr
                       model of the atom, the
            1s22s22p2 atomwhere we thinkplanet 2
                      one
                             resembling a
                                           of an
                                          2s22p
                       with moons orbiting (or
                           the solar system)


                N                          N


            1s22s22p3                   2s22p3



group   1      2        13 14 15 16 17 18
        H                                          He

        Li    Be         B    C   N    O       F   Ne   Pg
                                                        44
C                      C


                        1s22s22p2               2s22p2
     then the valence
electrons are those on the
 outer edge (like Neptune
   for young-upstarts or
    Pluto for us oldies)     N                      N


                        1s22s22p3               2s22p3



         group      1        2      13 14 15 16 17 18
                    H                                       He

                    Li    Be        B   C   N   O       F   Ne   Pg
                                                                 44
C                      C


                        1s22s22p2               2s22p2
     then the valence
electrons are those on the
 outer edge (like Neptune
   for young-upstarts or
    Pluto for us oldies)     N                      N


                        1s22s22p3               2s22p3



         group      1        2      13 14 15 16 17 18
                    H                                       He

                    Li    Be        B   C   N   O       F   Ne   Pg
                                                                 44
C                        C


            1s22s22p2                2s22p2



               N                        N


            1s22s22p3                2s22p3

                                         absolute
                                    rubbish...but more
group   1     2         13 14 15    16 17 18
                                     comprehendible!

        H                                       He

        Li    Be        B   C   N   O       F   Ne       Pg
                                                         41
C                        C


            1s22s22p2               2s22p2



               N                        N    an easy we to
                                        remember the number
                                        of valence electrons is
            1s22s22p3               2s22p3
                                             to take group
                                               number...



group   1     2         13 14 15 16 17 18
        H                                       He

        Li    Be        B   C   N   O       F   Ne                Pg
                                                                  41
C                        C


              1s22s22p2               2s22p2



                 N                        N

                                                      ...and ignore
              1s22s22p3               2s22p3              first ‘1’



 valence
electrons 1     2         3   4   5   6       7   8
         H                                        He

         Li     Be        B   C   N   O       F   Ne                  Pg
                                                                      41
C                        C


              1s22s22p2               2s22p2



                 N                        N


              1s22s22p3               2s22p3


 valence
electrons 1     2         3   4   5   6       7   8    so oxygen
                                                    (group 16) has
         H                                        He 6 valence

         Li     Be        B   C   N   O       F   Ne
                                                       electrons
                                                                 Pg
                                                                 41
what do valence
electrons tell us?
H
    1       2

H                     H
4
            3   O
    H
                    the number of
                           bonds
the shape of
    molecules



                109°
?
how
atoms are
                happy if they
                 have a full
               valence shell...



    Ne

   1s22s22p6




noble gas
Ne         ...commonly
               this means 8
                 electrons




   1s22s22p6




noble gas
8
electrons
              Ne




            full
            shell
C


1s22s22p2
            4   bonds



   N


1s22s22p3
            3   bonds



   O


1s22s22p4
            2   bonds
                        Pg
                        36
Pg
                                  45


   C           4
             valence
            electrons
              so for carbon to
              get to 8 it needs
              4 more electrons



1s22s22p2
                                  Pg
                                  45
Pg
                    46


   C
          or 4 new
       covalent bonds




4 bonds             Pg
                    46
C

nitrogen has 5
    valence1s22s22p2
 electrons...so
                       4   bonds

needs 3 more...



             N


         1s22s22p3
                       3   bonds



             O


         1s22s22p4
                       2   bonds
                                   Pg
                                   36
N          5
             valence
            electrons


1s22s22p3
                        Pg
                        46
so forms 3
covalent bonds




                 N


 3 bonds             Pg
                     46
C


              1s22s22p2
                            4   bonds


 oxygen needs 2
more electrons so
forms 2 covalent
     bonds
                    N


                1s22s22p3
                            3   bonds



                  O


              1s22s22p4
                            2   bonds
                                        Pg
                                        36
O          6
             valence
            electrons


1s22s22p4
                        Pg
                        46
O


2 bonds   Pg
          46
C


1s22s22p2
            4   bonds

                  hopefully, you can see




            3
                   this is where those
                    magic numbers in
                    lecture one came
   N            bonds      from!



1s22s22p3




   O


1s22s22p4
            2   bonds
                                           Pg
                                           34
Pg




8
                               36




                   H
                 H C H
                   H
Octet   rule: 8 valence electrons
Pg




8
                           37/46
            H H
          H C N O
            H   H
Octet   rule: 8 valence electrons
Pg
             Lewis structures                        37/46
              Hydrofluoric acid HF

H       +    F             H F              ≡         H   F


                           use octet rule to draw
                 Methanol CH OH
                             3
                           the structure of stable
                                molecules...


                         H                       H
C   +   O   + 4H       H C O H      ≡H           C    O   H
                         H                       H
Pg
             Lewis structures                             41
              Hydrofluoric acid HF
                                     H–F easy..H = 2
                                     electrons (full s
                                    orbital) & F = 8...
H       +    F             H F        ≡            H      F


                 Methanol CH3OH

                         H                  H
C   +   O   + 4H       H C O H    ≡H        C     O       H
                         H                  H
Pg
             Lewis structures                        37/46
                        Lewis structure shows
                         all valence electrons
              Hydrofluoric acid HF
                          represented by our
                         simple diagram H–F




H       +    F                 H F               ≡       H   F


                 Methanol CH3OH

                         H                           H
C   +   O   + 4H       H C O H          ≡H           C   O   H
                         H                           H
Pg
             Lewis structures               37/46
              Hydrofluoric acid HF

H       +    F             H F        ≡
                                     works for
                                    more complex
                                                   H   F
                                     molecules


                 Methanol CH3OH

                         H                 H
C   +   O   + 4H       H C O H    ≡H       C       O   H
                         H                 H
Pg
              Lewis structures                     37/46
               Hydrofluoric acid HF

H       +      F                        H F    ≡       H   F


                   Methanol CH3OH
              Note: it helps to leave
            lone pairs (of electrons)
               on diagram...this is
            where a lot of chemistry
                     occurs...                     H
                                    H
C   +   O   + 4H                  H C O H     ≡H   C   O   H
                                    H              H
Acetone CH3COCH3
  3 C       +         O   +   6H




   how do we deal
  with more complex
      molecules?




                                   Pg
                                   44
Acetone CH3COCH3
                3 C     +   O   +   6H



   first draw all the
atoms where you think       O
   they might go...
                        H       H
                            C
                   H    C       C   H
                        H       H


                                         Pg
                                         44
Acetone CH3COCH3
             3 C          +   O   +   6H

 now join all the atoms
 together...some of the
    atoms have full
  valence shells so we
can draw them in as on        O
     the next slide...

                      H   C   H
                        C   C
                      H       H
                        H   H



                                           Pg
                                           44
Acetone CH3COCH3
  3 C    +   O   +      6H

                     the central C and O
                       both have only 7
                     valence electrons...



             O

        H   C   H
          C   C
        H       H
          H   H



                                            Pg
                                            44
Acetone CH3COCH3
                  3 C            +   O       +   6H




                                     O
  ...but if they share 4
electrons they both have     H   C   H
8 valence electrons...this     C   C
 gives us a double bond
                             H       H
         (alkene)
                               H   H


                             O                   O
                             C
                                         ≡            Pg
                  H3C            CH3                  44
–
Borohydride
anion BH4 –




               what happens if
              we have a negative
               charge (anion)?




                                   Pg
                                   44
–
Borohydride
anion BH4 –




                        take the atoms
                       as normal and...



B   + 3H   +   H


                                          Pg
                                          44
–
Borohydride
anion BH4 –

                   add electron




B   + 3H   +   H
                                  ...add an electron



                                                       Pg
                                                       44
–
Borohydride
anion BH4 –

                   add electron




                             H             H
B   + 3H   +   H           H B H   ≡   H   B   H
                             H             H
                                               Pg
                                               44
–
Borohydride
anion BH4 –

                   add electron


                       does it matter
                     which atom we give
                      the electron to?

                                 H                H
B   + 3H   +   H               H B H      ≡   H   B   H
                                 H                H
                                                      Pg
                                                      44
–
Borohydride
anion BH4 –

                   add electron


                       does it matter
                     which atom we give
                      the electron to?

                                 H                         H
B   + 3H   +   H               H B H         ≡      H      B
                                          no! (but in this case
                                                                  H
                                 H          H– makes more
                                                            H
                                            chemical sense)
                                                                  Pg
                                                                  44
+
Ammonium
cation NH4 +

               lose electron


                                if we have a
                               positive charge
                               (cation) we do
                               the opposite...




                                                 Pg
                                                 44
+
Ammonium
cation NH4 +

                  lose electron



                       start with our
                      normal atoms...



 N   + 3H   + H


                                        Pg
                                        44
+
Ammonium
cation NH4 +

                  lose electron




 N   + 3H   + H
                      then remove an
                         electron


                                       Pg
                                       44
+
Ammonium
cation NH4 +

                  lose electron




                            H             H
 N   + 3H   + H           H N H   ≡   H   N   H
                            H             H
                                              Pg
                                              44
where is the
               charge?




is it on one atom?
all over the molecule...




                No, its all over the
                 molecule! But...
but the truth isn't useful, so...
formal charges localise
charge on an atom...
this is ‘electron book-
                    keeping’...we are just
                   assigning charge to one
                     atom to help explain
                          chemistry...




formal charges localise
charge on an atom...
formal  number of  number of        ½ number
charge = valence – unshared –       of shared
  (fc)   electrons electrons        electrons
                    ...on an atom




                                           Pg
                                           47
formal  number of  number of     ½ number
charge = valence – unshared – of shared
  (fc)   electrons electrons      electrons
                             ...according to
                                   the atoms
                                 position in the
                                 periodic table




                                                   Pg
                                                   47
formal  number of  number of    ½ number
charge = valence – unshared –   of shared
  (fc)   electrons electrons    electrons
...in lone pairs...




                                       Pg
                                       47
formal  number of  number of    ½ number
charge = valence – unshared –   of shared
  (fc)   electrons electrons    electrons
         ...or the number
         of bonds to that
                atom




                                       Pg
                                       47
formal  number of  number of           ½ number
charge = valence – unshared –          of shared
  (fc)   electrons electrons           electrons




                         H                    H
 N   + 3H   + H        H N H      ≡     H     N      H
                         H                    H
                                            cation
                  N fc = 5-0-½(8)=+1
                                                     Pg
                                                     47
formal  number of  number of                   ½ number
 charge = valence – unshared –                  of shared
   (fc)   electrons electrons                   electrons




                                  H                    H
    N     + 3H       + H        H N H      ≡     H     N      H
                                  H                    H
no charge on H as:
                                                     cation
 H = 1-0-½(2) = 0          N fc = 5-0-½(8)=+1
                                                              Pg
                                                              47
formal  number of  number of                     number of
charge = valence – unshared –                      bonds
  (fc)   electrons electrons




                                      H                    H
             the simplified
 N   +   3Hformula of bonds)
               + (just use
           number
                    H               H N H        ≡   H     N      H
                                      H                    H
                                                         cation
                               N fc = 5-0-4=+1
                                                                  Pg
                                                                  47
formal  number of  number of             ½ number
charge = valence – unshared –            of shared
  (fc)   electrons electrons             electrons




                                 O
O + O + O
               O O
                     O   ≡   O
                                     O
                 O3          neutral
                ozone




                                                Pg
                                                47
formal  number of  number of             ½ number
charge = valence – unshared –            of shared
  (fc)   electrons electrons             electrons




                                 O
O + O + O
               O O
                     O   ≡   O
                                     O
                  O3         neutral
                 ozone

             lhs O; fc = 6-4-½(4)=0

                                                Pg
                                                47
formal  number of  number of             ½ number
charge = valence – unshared –            of shared
  (fc)   electrons electrons             electrons




                                 O
O + O + O
               O O
                     O   ≡   O
                                     O
                  O3         neutral
                 ozone

             lhs O; fc = 6-4-½(4)=0
             central O; fc = 6-2-½(6)=+1
             rhs O; fc = 6-6-½(2)=-1            Pg
                                                47
formal  number of  number of             ½ number
charge = valence – unshared –            of shared
  (fc)   electrons electrons             electrons




                                 O
O + O + O
               O O
                     O   ≡   O
                                     O
                  O3         neutral
                 ozone

             lhs O; fc = 6-4-½(4)=0
             central O; fc = 6-2-½(6)=+1
             rhs O; fc = 6-6-½(2)=-1            Pg
                                                47
formal  number of  number of           ½ number
charge = valence – unshared –          of shared
  (fc)   electrons electrons           electrons




                                 O
O + O + O
               O O
                     O   ≡   O
                                     O
                                       ≡   O    O
                                                    O
                  O3         neutral       atom's formal
                 ozone                        charges

             lhs O; fc = 6-4-½(4)=0
             central O; fc = 6-2-½(6)=+1
             rhs O; fc = 6-6-½(2)=-1                Pg
                                                    47
formal  number of  number of                   ½ number
charge = valence – unshared –                  of shared
  (fc)   electrons electrons                   electrons




                                         O
O + O + O
                     O O
                             O   ≡   O
                                             O
                                               ≡   O    O
                                                            O
            ozone neutral as
                           O3        neutral       atom's formal
            + & – cancel each
                         ozone                        charges
                other out

                 lhs O; fc = 6-4-½(4)=0
                 central O; fc = 6-2-½(6)=+1
                 rhs O; fc = 6-6-½(2)=-1                    Pg
                                                            47
formal  number of  number of                  ½ number
charge = valence – unshared –                 of shared
  (fc)   electrons electrons                  electrons

            these charges
             explain why
             ozone is so
               reactive!
                                        O
O + O + O
                     O O
                            O   ≡   O
                                            O
                                              ≡   O    O
                                                           O
                        O3          neutral       atom's formal
                       ozone                         charges

                 lhs O; fc = 6-4-½(4)=0
                 central O; fc = 6-2-½(6)=+1
                 rhs O; fc = 6-6-½(2)=-1                   Pg
                                                           47
formal  number of  number of                      number of
charge = valence – unshared –                       bonds
  (fc)   electrons electrons




                                            O
O + O + O
                          O O
                                O   ≡   O
                                                O
                                                  ≡   O    O
                                                               O
                             O3         neutral       atom's formal
      the simplified        ozone                        charges
    formula (just use
    number of bonds)
                        lhs O; fc = 6-4-2=0
                        central O; fc = 6-2-3=+1
                        rhs O; fc = 6-6-1=-1                   Pg
                                                               47
a   bond
      O


                     2
               H
           O
                   is electrons
a   bond




             2
           is electrons
simple model
quantum model
 more accurate...
Atomic orbitals
it's a quantum world...



                          we’ve looked at a
                          nice simple model
                                so far...
Atomic orbitals
it's a quantum world...




                         mathematicians and
                    physicists have shown it’s a bit
                     more complicated in ‘reality’
but I don't like maths...




so...here's some pretty pictures...
90%
atomic orbital




                    atomic orbital is the
                 volume of space in which
                 there is a 90% chance of
                     finding an electron
                                            Pg
                                            36
2
                 remember: a

atomic orbital   maximum of 2
                 electrons per
                    orbital




 electrons
                                 Pg
                                 37
a 1s orbital is also
 a sphere...just a
    lot smaller




2s                                  Pg
                                    38
                       Pic: Dr. Jonathan Gutow
let’s ignore this
     nasty little effect
         of maths...




2s                             Pg
                               38
                  Pic: Dr. Jonathan Gutow
px       z       py       z       pz       z




             y                y                 y




     x                x                x




2p                                             Pg
                                               38
px       z       py         z                 pz       z




             y                          y                   y




     x                x                            x




2p
                          each of the three
                            2p orbitals is
                             dumbbell
                              shaped...                    Pg
                                                           38
px       z                      py       z       pz       z




                     y                       y                 y




     x                               x                x




2p
               ...they are
             identical in all
             ways except...
                                                              Pg
                                                              38
px       z       py          z                   pz       z




             y                            y                    y




     x                x                               x




2p
                            ...they point in
                          different directions
                          (hence the names)
                                                              Pg
                                                              38
px       z       py       z             pz          z




             y                  y                        y


                                 this is one orbital
                              (just has two different
     x                x           coloured areas)
                                             x




2p                                                      Pg
                                                        34
afraid?
you will be...
our simple Lewis model
 helps explain a lot of
 chemistry...especially
      reactions...        what is a
                           bond?
what is a
                              bond?
...but it fails to explain
   such fundamental
 concepts as shape...
...actually, it can explain
 shape if we use VSEPR
   theory...but anyways,
  lets use those orbitals




                              what is a
                               bond?
single (σ) bond
              H•    +   H•                   H H
energy




                                here we have 2
                               hydrogen atoms
                             (each with 1 electron
                                in a 1s orbital)
                                                          Pg
         H•
         1s
                                                     H•
                                                     1s   37
single (σ) bond
              H•    +   H•            H H



                             σ*

                                   to form a covalent
                                     bond they must
energy




                                       share their
                                       electrons...




                             σ                               Pg
         H•
         1s
                             H–H                        H•
                                                        1s   35
single (σ) bond
              H•    +   H•           H H



                             σ*
energy




                                   ...this is achieved
                                   by combining the
                                       two atomic

                                                          Pg
                                   orbitals to give...

                             σ
         H•
         1s
                             H–H                     H•
                                                     1s   35
single (σ) bond
              H•    +   H•           H H



                             σ*    ...a new molecular
                                    orbital, a sigma σ
                                     orbital (or bond)
energy




                             σ                           Pg
         H•
         1s
                             H–H                    H•
                                                    1s   35
single (σ) bond
              H•    +   H•          H H


                                     ...this bonding
                             σ*    orbital is lower in
                                    energy than the
                                   atoms...so a bond
                                         will form
energy




                             σ                           Pg
         H•
         1s
                             H–H                    H•
                                                    1s   35
single (σ) bond
                H•      +      H•          H H
          a consequence of the
         maths is we also get an
           anti-bonding sigma
         orbital (σ*)...2 orbitals
                                     σ*
         must give 2 new orbitals
energy




                                     σ                Pg
           H•
           1s
                                     H–H         H•
                                                 1s   37
single (σ) bond
                  H•       +          H•         H H



                                           σ*
energy




          ...but lets ignore this
         confusing little devil for
              the time being!




                                           σ                Pg
             H•
             1s
                                           H–H         H•
                                                       1s   37
single (σ) bond




it is called a σ orbital as
   is symmetrical along
bond axis (you can rotate
  it like a cylinder and it
       doesn’t change)



                                    Pg
                              H H   47
single (σ) bond  all bonds to H are
                   sigma (as all are like a
                     cylinder)...here we
                   overlap 1s of H with 2p
                     of C and get sigma
                            bond)




C•      +   H•         C H
                                              Pg
                                              37
Pg
               single (σ) bond                 38
                      σ*
energy




                         if we take two 2p
                       orbitals and combine
                        them head-to-head

         C•            σ                      C•
         2py          C–C                     2py
Pg
               single (σ) bond                       38
                      σ*
                            ...we get a sigma
                                σ bonding
                            orbital...it is still
energy




                             like a cylinder...




         C•            σ                            C•
         2py          C–C                           2py
Pg
               single (σ) bond                    38
                      σ*
energy




                                ...this is the
                              normal single
                             bond we observe
                              in alkanes etc.

         C•            σ                         C•
         2py          C–C                        2py
Pg
               single (σ) bond                      38
                      σ*
                             this is one orbital
                                 NOT three
energy




         C•            σ                           C•
         2py          C–C                          2py
single (σ) bond




             the blue bit is the
           sigma orbital...ignore

                                    Pg
            the red orbitals for
              the time being...

                                    35
single bond



    or the simple
                 C C
      version...
   THIS IS ALL YOU
   NEED TO KNOW




                     σ (sigma) bond
single bond




         σ (sigma) bond
single bond




         σ (sigma) bond
sp3
                         C
   an atom with 4 σ
bonds is called an sp3
atom (as 1 x s and 3 x       Pg
  p used in bonding)
                             38
sp3                       1
    YOU NEED TO
     KNOW THIS
                  4           2
  4
points                3
tetrahedral     H
                   Br
                    C
                      Br
                  H



         109°



                sp3
                        Pg
                        41
tetrahedral            H   C
                              Br

                             Br
                         H
                     sp3 atoms are
                 tetrahedral in shape
                (the bonds stay as far
                  apart as possible)

         109°



                       sp3
                                         Pg
                                         41
tetrahedral                            sp3




maximum separation of four points
maximum separation of four valence electron pairs
Pg
                  double (σ + π) bonds                        38
                           C C


                            C=C
                             π*
energy




                            C=C
                            π
                                   two 2p orbitals can
                                  combine side-to-side


         carbon                                          carbon
           2pz             C C                             2pz
Pg
                  double (σ + π) bonds              38
                           C C


                            C=C
                             π*
energy




                                  the new bond
                                  is a pi π bond
                            C=C
                            π


         carbon                                carbon
           2pz             C C                   2pz
Pg
                  double (σ + π) bonds               38
                           C C


                            C=C
                             π*
energy




                            C=C
                            π

                                   here we have a
                                  C–C σ bond and
         carbon                     a pi π bond carbon
           2pz             C C                    2pz
Pg
                  double (σ + π) bonds        38
                                C C


                                C=C
                                 π*
energy




                                C=C
                                 π
            the pi π bond is
            one orbital (with
             two bits to it)
         carbon                          carbon
           2pz                  C C        2pz
double (π) bond




                  Pg
                  38
double (π) bond




it is called a pi π orbital as
  rotation around the C–C
axis causes a change (from
  red to blue) so no longer
        like a cylinder          Pg
                                 38
double (π) bond


            remember: this is ONE
           orbital (just two different
               coloured halves)




                                         Pg
                                         35
double (π) bond


 we have an inner σ bond
 (the rod) and an outer π
bond (the orbital) hence it
     is a double bond




                              Pg
                              38
no


rotation
H3C CH3         CH3




                        CH3              CH3
                                        the p bond prevents
                                 O    H
                                     alkenes from rotating (the
                                     two bonds can’t twist pass
multistep enzyme-                           each other)...
                                           light isomerises
catalysed reverse                             complexed
     process                                  cis-retinal


           H3C CH3         CH3       CH3   O

                                               H

                     CH3


Pg
38
H3C CH3         CH3




                        CH3              CH3
                             this can effect
                                  O      H
                           shape of molecule

multistep enzyme-                           light isomerises
catalysed reverse                              complexed
     process                                   cis-retinal


           H3C CH3         CH3        CH3      O

                                                   H

                     CH3


Pg
38
H3C CH3         CH3




                        CH3              CH3

                                 O   H
                                                              we must break π
                                                                 bond before
multistep enzyme-                          light isomerises
catalysed reverse                             complexed       alkene can rotate
     process                                  cis-retinal


           H3C CH3         CH3       CH3   O

                                               H

                     CH3


Pg
38
H3C CH3         CH3




                        CH3              CH3
                                                                 the change in
                                 O   H
                                                              shape initiates the
                                                              visual cascade and
multistep enzyme-                          light isomerises        our sight
catalysed reverse                             complexed
     process                                  cis-retinal


           H3C CH3         CH3       CH3   O

                                               H

                     CH3


Pg
38
H3C CH3         CH3




                        CH3              CH3

                                 O   H

multistep enzyme-                          light isomerises
catalysed reverse                             complexed
     process                                  cis-retinal


           H3C CH3         CH3       CH3   O                  why do you think
                                                              red path is easy
                                               H               but blue hard?

                     CH3


Pg
38
double bond



   or the simple
     version...
  THIS IS ALL YOU
  NEED TO KNOW




                    π (pi) bond
double bond




              π (pi) bond
sp2
   an atom with three σ
    orbitals and one π
  orbital is called an sp2
 atom (we only count the
                             C
 orbitals used in making

                                 Pg
        s orbitals)



                                 38
sp2                            1
         3
  3
                               2
         1 double bond and 2
         single bonds and we

points     have an sp2 atom
trigonal
       planar


     120°
            sp2 atoms are trigonal planar




                   sp2
               (flat and pointing to the
            corners of a triangle)...again,
             this is because the orbitals
Pg             try to be as far apart as
                       possible
41
trigonal                                      Pg
                                              41
planar
sp 2




maximum separation of three points
maximum separation of three valence electron pairs
triple (σ + 2x π) bonds


                   σ
               H              C                   C       H

          π (2pz + 2pz)                               σ
    a triple bond (like an        π (2py + 2py)
alkyne) is formed from one
σ bond and two π bonds (at
 right angles to each other
 due to the direct of the p
 orbitals that made them)     σ    π
                       H          C C
                                   π
                                                  H           Pg
                                                              39
triple (σ + 2x π) bonds       so...two p orbitals combine
                            head-to-head to give a σ bond
                              and two pairs of p orbitals
                             combine side-to-side to give
                            the two π orbitals (& there are
                                  only two π orbitals)

        σ
    H           C                   C          H

π (2pz + 2pz)                           σ

                    π (2py + 2py)


                σ    π
            H       C C
                     π
                                    H                         Pg
                                                              39
sp
    an atom with two σ
orbitals and two π orbitals
 is called an sp atom (as
  two orbitals made the
     basic σ skeleton)
                              C
                                  Pg
                                  39
sp
         1   2
  2
points
linear


     an atom with two
    groups on it will be

                             180°
                                    sp Pg
  linear (a straight line)
  as the orbitals stay as
   far apart as possible



                                       40
linear
sp



maximum separation of two points
maximum separation of two valence electron pairs
H3C
                 H
                                    CO2H
     OH   O
                     O
                                    OCH3
                          H
                                     here is a real
     OH   O                    molecule...we should be
              dynemicin A      able to identify the types
                                  of atoms present...



Pg
40
four groups attached so
                             it must be sp3 and as
                            those groups try to stay
                            as far apart as possible
                                it is tetrahedral



                         H3C
                 H
                                   CO2H
     OH   O
                     O
                                   OCH3
                          H

     OH   O
              dynemicin A
                                              sp3
                                          tetrahedral
Pg
40
...only three groups so
           sp2 and flat, trigonal
                   planar

                              H3C
                     H
                                        CO2H
     OH     O
                         O                        sp2
                                        OCH3   trigonal
                                    H
                                                planar

     OH     O
                dynemicin A
                                               sp3
                                           tetrahedral
Pg
40
sp
                                                         linear
  straight line, two
 groups must be sp
                                           H3C
                                   H
     and linear
                                                 CO2H
                       OH   O
                                       O                   sp2
                                                 OCH3   trigonal
                                            H
                                                         planar

                       OH   O
                                dynemicin A
                                                        sp3
                                                    tetrahedral
Pg
40
what is
     oxygen?
                                   H3C
                           H
                                         CO2H
               OH   O
                               O
                                         OCH3
                                    H

               OH   O
                        dynemicin A


Pg
40
...is it sp as
     what is                             attached to two

     oxygen?                             carbon atoms?



                                   H3C
                           H
                                              CO2H
               OH   O
                               O
                                              OCH3
                                    H

               OH   O
                        dynemicin A


Pg
40
sp,   sp2   or     sp3?




H
O             look at a simpler
             system...water, sp,


      H          sp2 or sp3?
sp,   sp2   or   sp3?




H
O H                     draw Lewis
                        structure...
sp,   sp2   or    sp3?




H
O H           we have FOUR
             groups around O,
             two lone pairs &
            two H atoms. So it
                   is...
tetrahedral
  H
  O
      H   sp3
tetrahedral
  H
  O
      H   sp3
          that is why we draw
            water as a bent
          molecule...its shape
             is based on a
             tetrahedron...
tetrahedral
     H
     O
  ...any atom with
 four atoms or lone
  pairs around it is
   sp3 with all that
       entails!
                       H   sp3
sp, sp2
or sp
    O
     3?
            what kind of atom
              is the oxygen?
    C
H       H
1 double
 bond
    O         ...and two lone
              pairs, so three
            groups around the
    C        oxygen so it is...


H       H
trigonal
planar
H
    O
    C
        H
            sp2
sp, sp2
or sp3?
  N C H
     what kind of atom
      is the nitrogen?
1 triple
bond
  N C H
      and one lone pair
     so two groups so it
            is...
linear
 sp
  N C H
what have
 ....we learnt?




                                        •e l e c t r o n s
                                         where they are
                                        •b o n d s
                                         what they are
Courtesy: National Science Foundation
                                        •s h a p e
Read
Pages 36,
41, 48-57




            ©rachel_titiriga@flickr

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lecture 3: 123.101

  • 1. Unit One Parts 3 & 4: molecular bonding
  • 2. Unit One Parts 3&4 H O H3C Br O Br H CH3 Locating electrons Describing bonds Pages Shape of molecules 34 & 43
  • 3. Unit One 3&4 if we know where Parts electrons are we can predict reactions and shape...they really are key to understanding chemistry H O H3C Br O Br H CH3 Locating electrons Describing bonds Pages Shape of molecules 34 & 43
  • 4. Unit One Parts 3&4 H O H3C Br O Br H CH3 as I’ve taken the material out of order, I’ll give you some Locating electrons page numbers Describing bonds Pages Shape of molecules 35 & 45
  • 6. Na Cl Na Cl here we have an atom of sodium (Na) and an atom of Ionic bonds chlorine (Cl) Pg 34
  • 7. if we take one electron from Na and give it to Cl... Na Cl Na Cl Ionic bonds Pg 34
  • 8. Na Cl Na+ Cl- we get 2 charged species (cation = positive charge & anion = negative charge) Ionic bonds Pg 34
  • 9. Na+ Cl- NaCl opposite charges attract and give us an ionic bond Ionic bonds Pg 34
  • 10. covalent bonds H H if we bring 2 atoms together and they... Pg 34
  • 11. covalent bonds H H share their 2 electrons we have a covalent bond Pg 34
  • 12. covalent bonds H H this is the bond we’ll be dealing with most often and is represented by the black line H H 2 electrons per bond Pg 34
  • 13. covalent bonds H H H H please remember 2 that this line is 2 electrons electrons per bond Pg 34
  • 14. chemistry apain these are just extremes
  • 15. reality is in the middle
  • 16. where do we find electrons?
  • 17. ONE DOES NOT SIMPLY
  • 18. Aufbau Principle THIS IS THE LONG VERSION...NOT THE VERSION I DO IN THE LECTURES lowest energy orbital
  • 19. Aufbau Principle don’t worry about the name...just that electrons like to have lowest energy possible... lowest energy orbital
  • 20. rather like many students...
  • 21. 1 18 1 H H He 2 13 14 15 16 17 Li Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s1 energy 2s 2px 2py 2pz hydrogen Pg 1s 43
  • 22. 1 18 1 H H He 2 13 14 15 16 17 Li Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s1 energy 2s 2px 2py 2pz just one electron hydrogen so in first orbital Pg 1s 43
  • 23. Pauli Exclusion Principle no two electrons are identical
  • 24. 1 18 2 H He He 2 13 14 15 16 17 Li Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s2 energy 2s 2px 2py 2pz helium Pg 1s 43
  • 25. 1 18 2 H He He 2 13 14 15 16 17 Li Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s2 energy 2s 2px 2py 2pz one electron has spin +½ (up) and the other spin –½ (down) helium Pg 1s 43
  • 26. 1 18 2 H He He 2 13 14 15 16 17 Li Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s2 energy 2s 2px 2py 2pz doesn’t matter what it means...just remember helium an electron can only be up or down Pg 1s 43
  • 27. 1 18 2 H He He 2 13 14 15 16 17 Li Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s2 energy 2s 2px 2py 2pz so can only ever have two electrons per orbital helium Pg 1s 43
  • 28. 1 18 H He 2 13 14 15 16 17 3 Li Be B C N O F Ne Li Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 2px 2py 2pz 1s22s1 energy 2s lithium Pg 1s 43
  • 29. 1 18 H He 2 13 14 15 16 17 3 Li Be B C N O F Ne Li Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 2px 2py 2pz 1s22s1 energy lithium obeys both rules...fill lowest orbital 2s first (until full) then fill next lowest) lithium Pg 1s 43
  • 30. 1 18 H He 2 13 14 15 16one more ...adding 17 4 electron is easy... Li Be Be B C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 2px 2py 2pz 1s22s2 energy 2s beryllium Pg 1s 43
  • 31. 1 18 H He 2 13 14 15 16 17 5 Li Be B B C N O F Ne Na Mg ...and another... Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 2px 2py 2pz 1s22s22p1 energy 2s boron Pg 1s 43
  • 32. 1 18 H He 2 13 14 15 16 17 5 Li Be B B C N O F Ne Na Mg it could go in any of Al Si P S Cl Ar 3 4 5 6 7 8 9 10 x,11 y12 2pz, 2p 2p or they’re identical...well K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn they are As Se Br Kr energetically Ga Ge 2px 2py 2pz 1s22s22p1 energy 2s boron Pg 1s 43
  • 33. 1 18 H He 2 13 14 15 16 17 5 Li Be B B C N O F Ne but, where does Na Mg the next (and most Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 important as its K Ca Sccarbon) go?? Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr Ti V Cr 2px 2py 2pz 1s22s22p1 energy 2s boron Pg 1s 43
  • 34. Hund's rule electrons as far apart as possible (de ge n er a t e o rb i tals) (as long as it doesn’t violate any of the previous rules!)
  • 35. Hund's rule makes sense as like charges always repel... electrons as far apart as possible (de ge n er a t e o rb i tals)
  • 36. 1 18 H He 2 13 14 15 16 17 6 Li Be B C C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s22s22p 12p 1 2px 2py 2pz x y energy 2s 1s22s22p2 carbon Pg 1s 43
  • 37. 1 18 H He 2 13 14 15 16 17 6 Li Be B C C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s22s22p 12p 1 2px 2py 2pz could be 2pz, makes no x y difference... energy 2s 1s22s22p2 carbon Pg 1s 43
  • 38. that's a lot of electrons... luckily we don’t care about all them...
  • 39. all you have to remember is... ©jaci XIII@flickr
  • 40. 1 18 H He 2 13 14 15 16 17 6 Li Be B C C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s22s22p2 carbon atomic = number of number electrons Pg 45
  • 41. Valence electrons 1 18 H He 2 13 14 15 16 17 6 Li Be B C C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr 1s22s22p 12p 1 2px 2py 2pz x y energy 2s 1s22s22p2 carbon Pg 1s 43
  • 42. Valence electrons 1 18 H He 2 13 14 15 16 17 6 Li Be B C C N O F Ne Na Mg Al Si P S Cl Ar 3 4 5 6 7 8 9 10 11 12 K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr only need consider high energy electrons or those on the outside called the 1s22s22p 12p 1 2px 2py 2pz valence electrons. x y energy 2s 1s22s22p2 carbon Pg 1s 44
  • 43. C C if we consider the Bohr model of the atom, the 1s22s22p2 atomwhere we thinkplanet 2 one resembling a of an 2s22p with moons orbiting (or the solar system) N N 1s22s22p3 2s22p3 group 1 2 13 14 15 16 17 18 H He Li Be B C N O F Ne Pg 44
  • 44. C C 1s22s22p2 2s22p2 then the valence electrons are those on the outer edge (like Neptune for young-upstarts or Pluto for us oldies) N N 1s22s22p3 2s22p3 group 1 2 13 14 15 16 17 18 H He Li Be B C N O F Ne Pg 44
  • 45. C C 1s22s22p2 2s22p2 then the valence electrons are those on the outer edge (like Neptune for young-upstarts or Pluto for us oldies) N N 1s22s22p3 2s22p3 group 1 2 13 14 15 16 17 18 H He Li Be B C N O F Ne Pg 44
  • 46. C C 1s22s22p2 2s22p2 N N 1s22s22p3 2s22p3 absolute rubbish...but more group 1 2 13 14 15 16 17 18 comprehendible! H He Li Be B C N O F Ne Pg 41
  • 47. C C 1s22s22p2 2s22p2 N N an easy we to remember the number of valence electrons is 1s22s22p3 2s22p3 to take group number... group 1 2 13 14 15 16 17 18 H He Li Be B C N O F Ne Pg 41
  • 48. C C 1s22s22p2 2s22p2 N N ...and ignore 1s22s22p3 2s22p3 first ‘1’ valence electrons 1 2 3 4 5 6 7 8 H He Li Be B C N O F Ne Pg 41
  • 49. C C 1s22s22p2 2s22p2 N N 1s22s22p3 2s22p3 valence electrons 1 2 3 4 5 6 7 8 so oxygen (group 16) has H He 6 valence Li Be B C N O F Ne electrons Pg 41
  • 51. H 1 2 H H 4 3 O H the number of bonds
  • 52. the shape of molecules 109°
  • 53. ? how
  • 54. atoms are happy if they have a full valence shell... Ne 1s22s22p6 noble gas
  • 55. Ne ...commonly this means 8 electrons 1s22s22p6 noble gas
  • 56. 8 electrons Ne full shell
  • 57. C 1s22s22p2 4 bonds N 1s22s22p3 3 bonds O 1s22s22p4 2 bonds Pg 36
  • 58. Pg 45 C 4 valence electrons so for carbon to get to 8 it needs 4 more electrons 1s22s22p2 Pg 45
  • 59. Pg 46 C or 4 new covalent bonds 4 bonds Pg 46
  • 60. C nitrogen has 5 valence1s22s22p2 electrons...so 4 bonds needs 3 more... N 1s22s22p3 3 bonds O 1s22s22p4 2 bonds Pg 36
  • 61. N 5 valence electrons 1s22s22p3 Pg 46
  • 62. so forms 3 covalent bonds N 3 bonds Pg 46
  • 63. C 1s22s22p2 4 bonds oxygen needs 2 more electrons so forms 2 covalent bonds N 1s22s22p3 3 bonds O 1s22s22p4 2 bonds Pg 36
  • 64. O 6 valence electrons 1s22s22p4 Pg 46
  • 65. O 2 bonds Pg 46
  • 66. C 1s22s22p2 4 bonds hopefully, you can see 3 this is where those magic numbers in lecture one came N bonds from! 1s22s22p3 O 1s22s22p4 2 bonds Pg 34
  • 67. Pg 8 36 H H C H H Octet rule: 8 valence electrons
  • 68. Pg 8 37/46 H H H C N O H H Octet rule: 8 valence electrons
  • 69. Pg Lewis structures 37/46 Hydrofluoric acid HF H + F H F ≡ H F use octet rule to draw Methanol CH OH 3 the structure of stable molecules... H H C + O + 4H H C O H ≡H C O H H H
  • 70. Pg Lewis structures 41 Hydrofluoric acid HF H–F easy..H = 2 electrons (full s orbital) & F = 8... H + F H F ≡ H F Methanol CH3OH H H C + O + 4H H C O H ≡H C O H H H
  • 71. Pg Lewis structures 37/46 Lewis structure shows all valence electrons Hydrofluoric acid HF represented by our simple diagram H–F H + F H F ≡ H F Methanol CH3OH H H C + O + 4H H C O H ≡H C O H H H
  • 72. Pg Lewis structures 37/46 Hydrofluoric acid HF H + F H F ≡ works for more complex H F molecules Methanol CH3OH H H C + O + 4H H C O H ≡H C O H H H
  • 73. Pg Lewis structures 37/46 Hydrofluoric acid HF H + F H F ≡ H F Methanol CH3OH Note: it helps to leave lone pairs (of electrons) on diagram...this is where a lot of chemistry occurs... H H C + O + 4H H C O H ≡H C O H H H
  • 74. Acetone CH3COCH3 3 C + O + 6H how do we deal with more complex molecules? Pg 44
  • 75. Acetone CH3COCH3 3 C + O + 6H first draw all the atoms where you think O they might go... H H C H C C H H H Pg 44
  • 76. Acetone CH3COCH3 3 C + O + 6H now join all the atoms together...some of the atoms have full valence shells so we can draw them in as on O the next slide... H C H C C H H H H Pg 44
  • 77. Acetone CH3COCH3 3 C + O + 6H the central C and O both have only 7 valence electrons... O H C H C C H H H H Pg 44
  • 78. Acetone CH3COCH3 3 C + O + 6H O ...but if they share 4 electrons they both have H C H 8 valence electrons...this C C gives us a double bond H H (alkene) H H O O C ≡ Pg H3C CH3 44
  • 79. – Borohydride anion BH4 – what happens if we have a negative charge (anion)? Pg 44
  • 80. – Borohydride anion BH4 – take the atoms as normal and... B + 3H + H Pg 44
  • 81. – Borohydride anion BH4 – add electron B + 3H + H ...add an electron Pg 44
  • 82. – Borohydride anion BH4 – add electron H H B + 3H + H H B H ≡ H B H H H Pg 44
  • 83. – Borohydride anion BH4 – add electron does it matter which atom we give the electron to? H H B + 3H + H H B H ≡ H B H H H Pg 44
  • 84. – Borohydride anion BH4 – add electron does it matter which atom we give the electron to? H H B + 3H + H H B H ≡ H B no! (but in this case H H H– makes more H chemical sense) Pg 44
  • 85. + Ammonium cation NH4 + lose electron if we have a positive charge (cation) we do the opposite... Pg 44
  • 86. + Ammonium cation NH4 + lose electron start with our normal atoms... N + 3H + H Pg 44
  • 87. + Ammonium cation NH4 + lose electron N + 3H + H then remove an electron Pg 44
  • 88. + Ammonium cation NH4 + lose electron H H N + 3H + H H N H ≡ H N H H H Pg 44
  • 89. where is the charge? is it on one atom?
  • 90. all over the molecule... No, its all over the molecule! But...
  • 91. but the truth isn't useful, so...
  • 93. this is ‘electron book- keeping’...we are just assigning charge to one atom to help explain chemistry... formal charges localise charge on an atom...
  • 94. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons ...on an atom Pg 47
  • 95. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons ...according to the atoms position in the periodic table Pg 47
  • 96. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons ...in lone pairs... Pg 47
  • 97. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons ...or the number of bonds to that atom Pg 47
  • 98. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons H H N + 3H + H H N H ≡ H N H H H cation N fc = 5-0-½(8)=+1 Pg 47
  • 99. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons H H N + 3H + H H N H ≡ H N H H H no charge on H as: cation H = 1-0-½(2) = 0 N fc = 5-0-½(8)=+1 Pg 47
  • 100. formal number of number of number of charge = valence – unshared – bonds (fc) electrons electrons H H the simplified N + 3Hformula of bonds) + (just use number H H N H ≡ H N H H H cation N fc = 5-0-4=+1 Pg 47
  • 101. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons O O + O + O O O O ≡ O O O3 neutral ozone Pg 47
  • 102. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons O O + O + O O O O ≡ O O O3 neutral ozone lhs O; fc = 6-4-½(4)=0 Pg 47
  • 103. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons O O + O + O O O O ≡ O O O3 neutral ozone lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1 rhs O; fc = 6-6-½(2)=-1 Pg 47
  • 104. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons O O + O + O O O O ≡ O O O3 neutral ozone lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1 rhs O; fc = 6-6-½(2)=-1 Pg 47
  • 105. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons O O + O + O O O O ≡ O O ≡ O O O O3 neutral atom's formal ozone charges lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1 rhs O; fc = 6-6-½(2)=-1 Pg 47
  • 106. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons O O + O + O O O O ≡ O O ≡ O O O ozone neutral as O3 neutral atom's formal + & – cancel each ozone charges other out lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1 rhs O; fc = 6-6-½(2)=-1 Pg 47
  • 107. formal number of number of ½ number charge = valence – unshared – of shared (fc) electrons electrons electrons these charges explain why ozone is so reactive! O O + O + O O O O ≡ O O ≡ O O O O3 neutral atom's formal ozone charges lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1 rhs O; fc = 6-6-½(2)=-1 Pg 47
  • 108. formal number of number of number of charge = valence – unshared – bonds (fc) electrons electrons O O + O + O O O O ≡ O O ≡ O O O O3 neutral atom's formal the simplified ozone charges formula (just use number of bonds) lhs O; fc = 6-4-2=0 central O; fc = 6-2-3=+1 rhs O; fc = 6-6-1=-1 Pg 47
  • 109. a bond O 2 H O is electrons
  • 110. a bond 2 is electrons
  • 112. quantum model more accurate...
  • 113. Atomic orbitals it's a quantum world... we’ve looked at a nice simple model so far...
  • 114. Atomic orbitals it's a quantum world... mathematicians and physicists have shown it’s a bit more complicated in ‘reality’
  • 115. but I don't like maths... so...here's some pretty pictures...
  • 116. 90% atomic orbital atomic orbital is the volume of space in which there is a 90% chance of finding an electron Pg 36
  • 117. 2 remember: a atomic orbital maximum of 2 electrons per orbital electrons Pg 37
  • 118. a 1s orbital is also a sphere...just a lot smaller 2s Pg 38 Pic: Dr. Jonathan Gutow
  • 119. let’s ignore this nasty little effect of maths... 2s Pg 38 Pic: Dr. Jonathan Gutow
  • 120. px z py z pz z y y y x x x 2p Pg 38
  • 121. px z py z pz z y y y x x x 2p each of the three 2p orbitals is dumbbell shaped... Pg 38
  • 122. px z py z pz z y y y x x x 2p ...they are identical in all ways except... Pg 38
  • 123. px z py z pz z y y y x x x 2p ...they point in different directions (hence the names) Pg 38
  • 124. px z py z pz z y y y this is one orbital (just has two different x x coloured areas) x 2p Pg 34
  • 127. our simple Lewis model helps explain a lot of chemistry...especially reactions... what is a bond?
  • 128. what is a bond? ...but it fails to explain such fundamental concepts as shape...
  • 129. ...actually, it can explain shape if we use VSEPR theory...but anyways, lets use those orbitals what is a bond?
  • 130. single (σ) bond H• + H• H H energy here we have 2 hydrogen atoms (each with 1 electron in a 1s orbital) Pg H• 1s H• 1s 37
  • 131. single (σ) bond H• + H• H H σ* to form a covalent bond they must energy share their electrons... σ Pg H• 1s H–H H• 1s 35
  • 132. single (σ) bond H• + H• H H σ* energy ...this is achieved by combining the two atomic Pg orbitals to give... σ H• 1s H–H H• 1s 35
  • 133. single (σ) bond H• + H• H H σ* ...a new molecular orbital, a sigma σ orbital (or bond) energy σ Pg H• 1s H–H H• 1s 35
  • 134. single (σ) bond H• + H• H H ...this bonding σ* orbital is lower in energy than the atoms...so a bond will form energy σ Pg H• 1s H–H H• 1s 35
  • 135. single (σ) bond H• + H• H H a consequence of the maths is we also get an anti-bonding sigma orbital (σ*)...2 orbitals σ* must give 2 new orbitals energy σ Pg H• 1s H–H H• 1s 37
  • 136. single (σ) bond H• + H• H H σ* energy ...but lets ignore this confusing little devil for the time being! σ Pg H• 1s H–H H• 1s 37
  • 137. single (σ) bond it is called a σ orbital as is symmetrical along bond axis (you can rotate it like a cylinder and it doesn’t change) Pg H H 47
  • 138. single (σ) bond all bonds to H are sigma (as all are like a cylinder)...here we overlap 1s of H with 2p of C and get sigma bond) C• + H• C H Pg 37
  • 139. Pg single (σ) bond 38 σ* energy if we take two 2p orbitals and combine them head-to-head C• σ C• 2py C–C 2py
  • 140. Pg single (σ) bond 38 σ* ...we get a sigma σ bonding orbital...it is still energy like a cylinder... C• σ C• 2py C–C 2py
  • 141. Pg single (σ) bond 38 σ* energy ...this is the normal single bond we observe in alkanes etc. C• σ C• 2py C–C 2py
  • 142. Pg single (σ) bond 38 σ* this is one orbital NOT three energy C• σ C• 2py C–C 2py
  • 143. single (σ) bond the blue bit is the sigma orbital...ignore Pg the red orbitals for the time being... 35
  • 144. single bond or the simple C C version... THIS IS ALL YOU NEED TO KNOW σ (sigma) bond
  • 145. single bond σ (sigma) bond
  • 146. single bond σ (sigma) bond
  • 147. sp3 C an atom with 4 σ bonds is called an sp3 atom (as 1 x s and 3 x Pg p used in bonding) 38
  • 148. sp3 1 YOU NEED TO KNOW THIS 4 2 4 points 3
  • 149. tetrahedral H Br C Br H 109° sp3 Pg 41
  • 150. tetrahedral H C Br Br H sp3 atoms are tetrahedral in shape (the bonds stay as far apart as possible) 109° sp3 Pg 41
  • 151. tetrahedral sp3 maximum separation of four points maximum separation of four valence electron pairs
  • 152. Pg double (σ + π) bonds 38 C C C=C π* energy C=C π two 2p orbitals can combine side-to-side carbon carbon 2pz C C 2pz
  • 153. Pg double (σ + π) bonds 38 C C C=C π* energy the new bond is a pi π bond C=C π carbon carbon 2pz C C 2pz
  • 154. Pg double (σ + π) bonds 38 C C C=C π* energy C=C π here we have a C–C σ bond and carbon a pi π bond carbon 2pz C C 2pz
  • 155. Pg double (σ + π) bonds 38 C C C=C π* energy C=C π the pi π bond is one orbital (with two bits to it) carbon carbon 2pz C C 2pz
  • 157. double (π) bond it is called a pi π orbital as rotation around the C–C axis causes a change (from red to blue) so no longer like a cylinder Pg 38
  • 158. double (π) bond remember: this is ONE orbital (just two different coloured halves) Pg 35
  • 159. double (π) bond we have an inner σ bond (the rod) and an outer π bond (the orbital) hence it is a double bond Pg 38
  • 161. H3C CH3 CH3 CH3 CH3 the p bond prevents O H alkenes from rotating (the two bonds can’t twist pass multistep enzyme- each other)... light isomerises catalysed reverse complexed process cis-retinal H3C CH3 CH3 CH3 O H CH3 Pg 38
  • 162. H3C CH3 CH3 CH3 CH3 this can effect O H shape of molecule multistep enzyme- light isomerises catalysed reverse complexed process cis-retinal H3C CH3 CH3 CH3 O H CH3 Pg 38
  • 163. H3C CH3 CH3 CH3 CH3 O H we must break π bond before multistep enzyme- light isomerises catalysed reverse complexed alkene can rotate process cis-retinal H3C CH3 CH3 CH3 O H CH3 Pg 38
  • 164. H3C CH3 CH3 CH3 CH3 the change in O H shape initiates the visual cascade and multistep enzyme- light isomerises our sight catalysed reverse complexed process cis-retinal H3C CH3 CH3 CH3 O H CH3 Pg 38
  • 165. H3C CH3 CH3 CH3 CH3 O H multistep enzyme- light isomerises catalysed reverse complexed process cis-retinal H3C CH3 CH3 CH3 O why do you think red path is easy H but blue hard? CH3 Pg 38
  • 166. double bond or the simple version... THIS IS ALL YOU NEED TO KNOW π (pi) bond
  • 167. double bond π (pi) bond
  • 168. sp2 an atom with three σ orbitals and one π orbital is called an sp2 atom (we only count the C orbitals used in making Pg s orbitals) 38
  • 169. sp2 1 3 3 2 1 double bond and 2 single bonds and we points have an sp2 atom
  • 170. trigonal planar 120° sp2 atoms are trigonal planar sp2 (flat and pointing to the corners of a triangle)...again, this is because the orbitals Pg try to be as far apart as possible 41
  • 171. trigonal Pg 41 planar sp 2 maximum separation of three points maximum separation of three valence electron pairs
  • 172. triple (σ + 2x π) bonds σ H C C H π (2pz + 2pz) σ a triple bond (like an π (2py + 2py) alkyne) is formed from one σ bond and two π bonds (at right angles to each other due to the direct of the p orbitals that made them) σ π H C C π H Pg 39
  • 173. triple (σ + 2x π) bonds so...two p orbitals combine head-to-head to give a σ bond and two pairs of p orbitals combine side-to-side to give the two π orbitals (& there are only two π orbitals) σ H C C H π (2pz + 2pz) σ π (2py + 2py) σ π H C C π H Pg 39
  • 174. sp an atom with two σ orbitals and two π orbitals is called an sp atom (as two orbitals made the basic σ skeleton) C Pg 39
  • 175. sp 1 2 2 points
  • 176. linear an atom with two groups on it will be 180° sp Pg linear (a straight line) as the orbitals stay as far apart as possible 40
  • 177. linear sp maximum separation of two points maximum separation of two valence electron pairs
  • 178. H3C H CO2H OH O O OCH3 H here is a real OH O molecule...we should be dynemicin A able to identify the types of atoms present... Pg 40
  • 179. four groups attached so it must be sp3 and as those groups try to stay as far apart as possible it is tetrahedral H3C H CO2H OH O O OCH3 H OH O dynemicin A sp3 tetrahedral Pg 40
  • 180. ...only three groups so sp2 and flat, trigonal planar H3C H CO2H OH O O sp2 OCH3 trigonal H planar OH O dynemicin A sp3 tetrahedral Pg 40
  • 181. sp linear straight line, two groups must be sp H3C H and linear CO2H OH O O sp2 OCH3 trigonal H planar OH O dynemicin A sp3 tetrahedral Pg 40
  • 182. what is oxygen? H3C H CO2H OH O O OCH3 H OH O dynemicin A Pg 40
  • 183. ...is it sp as what is attached to two oxygen? carbon atoms? H3C H CO2H OH O O OCH3 H OH O dynemicin A Pg 40
  • 184. sp, sp2 or sp3? H O look at a simpler system...water, sp, H sp2 or sp3?
  • 185. sp, sp2 or sp3? H O H draw Lewis structure...
  • 186. sp, sp2 or sp3? H O H we have FOUR groups around O, two lone pairs & two H atoms. So it is...
  • 187. tetrahedral H O H sp3
  • 188. tetrahedral H O H sp3 that is why we draw water as a bent molecule...its shape is based on a tetrahedron...
  • 189. tetrahedral H O ...any atom with four atoms or lone pairs around it is sp3 with all that entails! H sp3
  • 190. sp, sp2 or sp O 3? what kind of atom is the oxygen? C H H
  • 191. 1 double bond O ...and two lone pairs, so three groups around the C oxygen so it is... H H
  • 192. trigonal planar H O C H sp2
  • 193. sp, sp2 or sp3? N C H what kind of atom is the nitrogen?
  • 194. 1 triple bond N C H and one lone pair so two groups so it is...
  • 195. linear sp N C H
  • 196. what have ....we learnt? •e l e c t r o n s where they are •b o n d s what they are Courtesy: National Science Foundation •s h a p e
  • 197. Read Pages 36, 41, 48-57 ©rachel_titiriga@flickr